N-Browse protocols

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N-Browse specifications

Information


Unique identifier OMICS_04120
Name N-Browse
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes
Wikipedia http://gmod.org/wiki/NBrowse

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  • person_outline N-Browse Team <>

Publication for N-Browse

N-Browse in pipeline

2018
PMCID: 5909171
PMID: 29706973
DOI: 10.3389/fpls.2018.00418

[…] provide predicted gene interaction information, and has gained its popularity for the rapid development of metabolic and metabolomics researches. other tools include mapviewer, metabolic pathways, n-browse, patmatch, vxinsight, java tree view, bulk data retrieval, gene symbol registry, and textpresso full text. arapot (www.araport.org) is also an important arabidopsis genome database […]


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N-Browse in publications

 (5)
PMCID: 5909171
PMID: 29706973
DOI: 10.3389/fpls.2018.00418

[…] provide predicted gene interaction information, and has gained its popularity for the rapid development of metabolic and metabolomics researches. other tools include mapviewer, metabolic pathways, n-browse, patmatch, vxinsight, java tree view, bulk data retrieval, gene symbol registry, and textpresso full text. arapot (www.araport.org) is also an important arabidopsis genome database […]

PMCID: 4411489
PMID: 25707592
DOI: 10.1016/j.gpb.2015.01.003

[…] resource center (abrc), and allows users to upload own data. tair provides several tools for users to query and analyze data, such as textpresso to extract and process biological literature, n-browse to view interactive biological networks, and gbrowse that displays multiple genomes to study genome duplication and evolution. overall, tair serves as a community resource for arabidopsis […]

PMCID: 3245127
PMID: 22110034
DOI: 10.1093/nar/gkr1062

[…] integrate multiple data sources into networks. each database has a unique combination of species, data sources, integration methods and user interface. examples of other multi-species databases are n-browse (), consensuspathdb (), i2d (), genemania (), pathwaycommons () and apid (), containing between 3 and 15 species. more extensive species coverage is provided by the visant database () […]

PMCID: 3048373
PMID: 21408209
DOI: 10.1371/journal.pgen.1002010

[…] two others (spg-7, smo-1) in the lep phenotype and of two further genes (cdt-1, xpo-2) in both phenotypes in a single experiment. four of these genes—pri-2, npp-6, cdt-1, and xpo-2—are predicted by n-browse to interact in a subnetwork that includes other genes for which rnai knockdown also produced ore phenotypes (). it is thus possible that these additional genes also influence the timing […]

library_books

WormBase 2007

PMCID: 2238927
PMID: 17991679
DOI: 10.1093/nar/gkm975

[…] on orthologous interactions are also displayed (). the wide range of interactions displayed through the website is greatly enhanced by the incorporation of the molecular interaction network browser—n-browse, developed by kris gunsalus’ group at nyu () (www.gnetbrowse.org). figure 3., the genetic map of c. elegans and well-described alleles are important resources for researchers. the latest […]


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N-Browse institution(s)
New York University, New York, NY, USA

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