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NanoFolder specifications


Unique identifier OMICS_03460
Name NanoFolder
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for NanoFolder

NanoFolder in publications

PMCID: 5897953
PMID: 29653577
DOI: 10.1186/s12951-018-0368-8

[…] the use of rna 2d structure prediction programme, only 70% of structure can be predicted accurately [, ]. though various online resources like mfold, 233 rna designer, 234 sfold, 235 nupack, 115 nanofolder, 236 and hyperfold, 182 have been developed, prediction of accurate rna structure and folding remains a major problem. rna 3d and 4d structure prediction is even more subtle. advancements […]

PMCID: 5333189
PMID: 28045501
DOI: 10.1021/acsnano.6b05737

[…] pose more constraints on the thermodynamic and kinetic aspects of rna folding. although several user-friendly online resources have been developed including mfold, rna designer, sfold, nupack, nanofolder, and hyperfold, accurate prediction of rna structure and folding for nanoparticle assembly remains a great challenge. rna nanotechnology necessitates the development of prediction software […]

PMCID: 5068708
PMID: 27755571
DOI: 10.1371/journal.pone.0164726

[…] representation has also been used to predict rna deleterious mutations by rnamute [] and rnamutants []. in addition, a coarse-grained approach is also applied for rna design such as rnaexinv [] and nanofolder []. we demonstrate the utility of the xios approach by classifying a representative set of pseudoknot-including rna structural families that have very low levels of sequence similarity–the […]

PMCID: 4707685
PMID: 26770259
DOI: 10.1016/j.nantod.2015.09.003

[…] the traditional rna folding program developed by zuker 30 years ago []. it is expected that computer algorithms will facilitate rna nanoparticle construction. a variety of computer programs such as nanofolder, nanotiler and rna2d3d are available to facilitate the in silico design of rna sequences (these sequences may contain inter-strand and intra-strand pseudoknot-like interactions) capable […]

PMCID: 4066900
PMID: 24758371
DOI: 10.1021/ar400329z

[…] of the capabilities of the program is to optimize motif placements and helix distortions in order to achieve structure closure. once the structural design issues are resolved, a web server called nanofolder can perform sequence design to generate rna sequences that are predicted to self-assemble into rna nps., after sequence optimization, nanotiler can be used again to perform mutations […]

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NanoFolder institution(s)
Basic Science Program, SAIC-Frederick, Inc; NCI-Frederick, Frederick, MD, USA

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