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Nanonet specifications

Information


Unique identifier OMICS_19159
Name Nanonet
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Biological technology Oxford Nanopore
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License Mozilla Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements
h5py, numpy
Maintained Yes

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  • person_outline Nanonet Team

Nanonet citations

 (32)
library_books

Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias

2018
Sci Rep
PMCID: 5816649
PMID: 29453452
DOI: 10.1038/s41598-018-21484-w

[…] strand through the pore. a student’s t-test is used to determine whether two consecutive events are significantly different. machine-learning algorithms recently released by ont (e.g., metrichor, nanonet, albacore, etc.) rely on trained neural networks to convert these moving window events into 5-mers, and the consolidation of these overlapping 5-mers is what results in a basecall. […]

library_books

A novel bi domain plant defensin MtDef5 with potent broad spectrum antifungal activity binds to multiple phospholipids and forms oligomers

2017
Sci Rep
PMCID: 5700942
PMID: 29170445
DOI: 10.1038/s41598-017-16508-w

[…] oligomerization of mtdef5. it seems likely that interaction of mtdef5 with a negatively charged phospho group is perhaps sufficient to initiate the oligomerization process. mtdef5 forms nanonet-like structures in presence of pi3p (data not shown). human α-defensin hd6 and more recently human β-defensin 1 has been reported to form self-assembled nanonets that trap bacteria […]

library_books

Activated Carbon Fibers “Thickly Overgrown” by Ag Nanohair Through Self Assembly and Rapid Thermal Annealing

2017
PMCID: 5680390
PMID: 29124409
DOI: 10.1186/s11671-017-2344-x

[…] ch3oh, which primarily resulted from higher co2 adsorption and more efficient electron transfer from agnps to co2 []. wan et al. synthesized highly dispersed cose2 nanoparticles on three-dimensional nanonet-like cfs by electrostatic spinning, and the electrocatalyst product possessed highly active, efficient, and stable properties for hydrogen evolution in acidic media []. however, current […]

library_books

Photodetectors Based on Organic–Inorganic Hybrid Lead Halide Perovskites

2017
PMCID: 5770665
PMID: 29375959
DOI: 10.1002/advs.201700256

[…] methacrylate (pmma), fluorous polymer (cytop), ps, and polylactic acid (pla) can be used., , , , other strategies include designing materials with special micromorphologies (e.g., micro/nw, nanonet, nanoplates, etc.) and incorporating functional materials allowing pds with long‐term stability., , the first oihps‐based pds was proposed by the xie and co‐workers, as shown in figure a. […]

library_books

A portable system for rapid bacterial composition analysis using a nanopore based sequencer and laptop computer

2017
Sci Rep
PMCID: 5516037
PMID: 28720805
DOI: 10.1038/s41598-017-05772-5

[…] reads only the template strand while 2d sequencing reads both strands) and/or by the difference in amplicon lengths (fig. , supplemental table )., initially we used the local base-calling software nanonet for the minion sequencing data. the resulting nucleotide sequences were searched using blast against our in-house genome database, genomesync (http://genomesync.org). overall, we found […]

library_books

Nanonet force microscopy for measuring forces in single smooth muscle cells of the human aorta

2017
Mol Biol Cell
PMCID: 5541840
PMID: 28450452
DOI: 10.1091/mbc.E17-01-0053

[…] force microscopy (nfm) measures forces exerted on or felt by cells attached to fiber nanonets. nfm is applied to cardiovascular pathologies to elucidate disease mechanisms in human patientsmo […]


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