NanoPack specifications

Information


Unique identifier OMICS_25757
Name NanoPack
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data An albacore summary file or a sequence file.
Input format FASTQ,BAM
Output format HTML,PNG,JPG,PDF,SVG,TIF,EPS
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Wouter de Coster <>

Additional information


https://docs.google.com/presentation/d/1rGeIngpbRubMjbh6FuHUka1rq5UwkHeZThdoXMpbzmk/edit?usp=sharing

Publication for NanoPack

NanoPack in publications

 (2)
PMCID: 5855923
PMID: 29593676
DOI: 10.3389/fmicb.2018.00422

[…] ansm based products are nasiol® antimoss protection, nasiol® homewood protection (https://nasiolgulf.com/), i-cannano metal paints, and i-cannano fillers (https://www.icannanopaints.com/), nanoseal™ nanopack (duncan, ), 4care lenscare nano-behälter, acticoat antibacterial barrier, jr nanotech solefresht nanosilver socks, and miradent miradent gelée toothpaste and mouth wash (wijnhoven et al., ). […]

PMCID: 3479059
PMID: 22873686
DOI: 10.1186/1556-276X-7-443

[…] and approved the final manuscript., es acknowledges the financial support of the nevet program administered by the russell berrie nanotechnology institute and by the marie curie reintegration grant (nanopack) administered by the european community. gs acknowledges the miriam and aaron gutwirth excellence scholarship award. this work was also supported by weizmann-technion-kit start up grant […]


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NanoPack institution(s)
Neurodegenerative Brain Diseases group, Center for Molecular Neurology, VIB & University of Antwerp, Antwerp, Belgium; Bioinformatics, Neuromics Support Facility, Center for Molecular Neurology, VIB & University of Antwerp, Antwerp, Belgium; Department of Biomolecular Engineering and Bioinformatics, University California Santa Cruz, Santa Cruz, CA, USA
NanoPack funding source(s)
Supported in part by the VIB (Flanders Institute for Biotechnology, Belgium), the University of Antwerp, the Flanders Agency for Innovation and Entrepreneurship (VLAIO), a PhD fellowship from VLAIO and a NSF DGE 1339067.

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