NanoPack specifications

Information


Unique identifier OMICS_25757
Name NanoPack
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data An albacore summary file or a sequence file.
Input format FASTQ,BAM
Output format HTML,PNG,JPG,PDF,SVG,TIF,EPS
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Wouter de Coster <>

Additional information


https://docs.google.com/presentation/d/1rGeIngpbRubMjbh6FuHUka1rq5UwkHeZThdoXMpbzmk/edit?usp=sharing

Publication for NanoPack

NanoPack institution(s)
Neurodegenerative Brain Diseases group, Center for Molecular Neurology, VIB & University of Antwerp, Antwerp, Belgium; Bioinformatics, Neuromics Support Facility, Center for Molecular Neurology, VIB & University of Antwerp, Antwerp, Belgium; Department of Biomolecular Engineering and Bioinformatics, University California Santa Cruz, Santa Cruz, CA, USA
NanoPack funding source(s)
Supported in part by the VIB (Flanders Institute for Biotechnology, Belgium), the University of Antwerp, the Flanders Agency for Innovation and Entrepreneurship (VLAIO), a PhD fellowship from VLAIO and a NSF DGE 1339067.

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