Nanopolish specifications


Unique identifier OMICS_16545
Name Nanopolish
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTA, BAM, FAST5
Operating system Unix/Linux
Programming languages C++
License MIT License
Computer skills Advanced
Stability Stable
Requirements libhdf5
Maintained Yes



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  • person_outline Jared Simpson <>

Publication for Nanopolish

Nanopolish institution(s)
Ontario Institute for Cancer Research, Toronto, Ontario, Canada; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA
Nanopolish funding source(s)
This work was supported by the Ontario Institute for Cancer Research through funds provided by the Government of Ontario, and in part by a Johns Hopkins University Catalyst award.

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