nanoraw specifications

Information


Unique identifier OMICS_16665
Name nanoraw
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, R, Shell (Bash)
License MIT License
Computer skills Advanced
Version 0.5
Stability Stable
Requirements
ggplot2, python, bwa, scipy, numpy, h5py, graphmap, nanoraw
Maintained Yes

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Documentation


Maintainer


  • person_outline Marcus Stoiber <>

Publication for nanoraw

nanoraw in publication

PMCID: 5399971
PMID: 28491281
DOI: 10.5256/f1000research.11363.r19519

[…] coding, template non-coding, complement coding, complement non-coding), this variation could be explained by errors in the raw signal mapping process, and other alternative mapping techniques (e.g. nanoraw ) may give better performance for linking raw signal to sequenced bases., it is possible that the observed difference between the raw and ideal event signal may be due to methylation […]


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nanoraw institution(s)
Lawrence Berkeley National Laboratory, Environmental Genomics and Systems Biology, Berkeley, CA, USA; University of Birmingham, Institute of Microbiology and Infection, Birmingham, USA; Lawrence Berkeley National Laboratory, Joint Genome Institute, Berkeley, CA, USA; University of Birmingham, School of Chemistry, Birmingham, USA; Centre for Computational Biology, School of Biosciences, University of Birmingham, Birmingham, USA; Department of Statistics, University of California, Berkeley, CA, USA; Preminon, LLC. A California Corporation, Antioch, CA, USA
nanoraw funding source(s)
This work was supported by the EPSRC (EP/N020901/1) and the European Union’s Horizon 2020 research and innovation program under grant agreement No 634890, “BeyondSeq”.

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