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NanoStringNorm

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A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data. Key features include an extensible environment for method comparison and new algorithm development, integrated gene and sample diagnostics, and facilitated downstream statistical analysis. By standardizing code and automating error capture, NanoStringNorm will enable more reproducible and robust analysis of NanoString datasets.

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NanoStringNorm versioning

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NanoStringNorm classification

NanoStringNorm specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.1.21
Requirements:
gdata, vsn

NanoStringNorm support

Documentation

Maintainer

  • Paul┬áBoutros <>

Credits

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Publications

Institution(s)

Informatics and Biocomputing Platform, Ontario Institute for Cancer Research, Toronto, Canada; Ontario Cancer Institute and Campbell Family Institute for Cancer Research, Princess Margaret Hospital, University Health Network, Toronto, Canada; Departments of Radiation Oncology and Medical Biophysics, University of Toronto, Toronto, Canada

Funding source(s)

Ontario Institute for Cancer Research; Ontario Ministry of Health and Long Term Care (OMOHLTC); Dr Mariano Elia Chair in Head & Neck Cancer Research; philanthropic support from the Wharton family, Joe's Team and Gordon Tozer

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