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A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data. Key features include an extensible environment for method comparison and new algorithm development, integrated gene and sample diagnostics, and facilitated downstream statistical analysis. By standardizing code and automating error capture, NanoStringNorm will enable more reproducible and robust analysis of NanoString datasets.

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NanoStringNorm classification

NanoStringNorm specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
NanoStringNorm version 1.1.21
Requirements:
R (≥ 2.14.0), gdata (≥ 2.8.2), vsn (≥ 3.22.0)

NanoStringNorm support

Documentation

Maintainer

Credits

Publications

  • (Waggott et al., 2012) NanoStringNorm: an extensible R package for the pre-processing of NanoString mRNA and miRNA data. Bioinformatics.
    PMID: 22513995

Institution(s)

Informatics and Biocomputing Platform, Ontario Institute for Cancer Research, Toronto, Canada M5G 0A3; Ontario Cancer Institute and Campbell Family Institute for Cancer Research, Princess Margaret Hospital, University Health Network, Toronto, Canada, M5G 2M9; Departments of Radiation Oncology and Medical Biophysics, University of Toronto, Toronto, Canada, M5G 2M9

Funding source(s)

Ontario Institute for Cancer Research; Ontario Ministry of Health and Long Term Care (OMOHLTC); Dr Mariano Elia Chair in Head & Neck Cancer Research; philanthropic support from the Wharton family, Joe's Team and Gordon Tozer

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