NAPAbench specifications

Information


Unique identifier OMICS_04894
Name NAPAbench
Alternative name Network Alignment Performance Assessment Benchmark
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Byung-Jun Yoon

Publication for Network Alignment Performance Assessment Benchmark

NAPAbench citation

library_books

Accurate multiple network alignment through context sensitive random walk

2015
BMC Syst Biol
PMCID: 4331682
PMID: 25707987
DOI: 10.1186/1752-0509-9-S1-S7

[…] as the algorithm can only handle pairwise alignments. For IsoRankN, we set the parameter α to 0.6 as in the original paper []. For BEAMS, we set the filtering threshold to 0.4 for IsoBase and 0.2 for NAPAbench as in the original paper [], and set the parameter α to 0.5. The parameter α for NetCoffee was set to 0.5. We used default parameters for SMETANA (i.e., nmax = 10, α = 0.9, and β = 0.8), and […]

NAPAbench institution(s)
Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA

NAPAbench reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review NAPAbench