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NAPP specifications

Information


Unique identifier OMICS_02784
Name NAPP
Alternative name Nucleic Acids Phylogenetic Profiling
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for Nucleic Acids Phylogenetic Profiling

NAPP citations

 (3)
library_books

Genome Wide Detection of Small Regulatory RNAs in Deep Sea Bacterium Shewanella piezotolerans WP3

2017
Front Microbiol
PMCID: 5471319
PMID: 28663744
DOI: 10.3389/fmicb.2017.01093

[…] look for conserved sRNAs.sRNAscanner, The sRNAscanner is a computational tool used to detect the intergenic small RNA specific transcriptional units (TU) in the completely sequenced bacterial genome.NAPP (Nucleic acid phylogenetic profiling), is a clustering method that efficiently identifies non-coding RNA (ncRNA) elements in a bacterial genome.Rfam, The Rfam database is a collection of RNA fami […]

library_books

Bioinformatics of prokaryotic RNAs

2014
RNA Biol
PMCID: 4152356
PMID: 24755880
DOI: 10.4161/rna.28647

[…] nment reliability scores computed by LocARNA-P not only improves the boundary prediction by more than a factor of three but also halves the FDR.A completely different comparative approach is taken by NAPP. First, it determines the phylogenetic distribution of conserved sequence elements as well as annotated protein-coding genes. Coherent phylogenetic distribution and co-occurrence in clusters of c […]

library_books

Computational Small RNA Prediction in Bacteria

2013
Bioinform Biol Insights
PMCID: 3596055
PMID: 23516022
DOI: 10.4137/BBI.S11213

[…] studies were also found in those phylogenetically conserved regions. Based on these intergenic conservation profiles, a computational protocol was developed to compute sRNA elements in bacteria. Both NAPP and PsRNA methods efficiently predict the intergenic regions of sRNAs without any precise start and ends. Due to this unique nature, we have categorized them under the ab initio group, though the […]

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NAPP institution(s)
Institut de Génétique et Microbiologie, UMR 8621, CNRS, Université Paris Sud, Orsay, France

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