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An algorithm for the pre-processing of mRNA data from the NanoString nCounter software, working from the output RCC files saved as a tab delimited text file and imported into R. NAPPA has been optimised to generate high quality robust data for subsequent analyses by optimizing steps to reduce bias and variability and reducing arbitrary decisions. The NAPPA function also provides options for how each algorithmic step is performed.

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NAPPA forum

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NAPPA versioning

No versioning.

NAPPA classification

NAPPA specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
NAPPA version 2.0.1
Requirements:
R (≥ 3.0.1), plyr (≥ 1.8), NanoStringNorm (≥ 1.1)

NAPPA support

Documentation

Maintainer

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