Online

An algorithm for the pre-processing of mRNA data from the NanoString nCounter software, working from the output RCC files saved as a tab delimited text file and imported into R. NAPPA has been optimised to generate high quality robust data for subsequent analyses by optimizing steps to reduce bias and variability and reducing arbitrary decisions. The NAPPA function also provides options for how each algorithmic step is performed.

User report

0 user reviews

0 user reviews

No review has been posted.

NAPPA forum

No open topic.

NAPPA versioning

No versioning.

NAPPA classification

NAPPA specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
NAPPA version 2.0.1
Requirements:
R (≥ 3.0.1), plyr (≥ 1.8), NanoStringNorm (≥ 1.1)

NAPPA support

Documentation

Maintainer

Related nCounter System tools

Most Recent Tools

NanoStringDiff
Desktop

NanoStringDiff

Offers a comprehensive and general framework to characterize NanoString…

Offers a comprehensive and general framework to characterize NanoString nCounter data and to detect differential expression (DE) genes for both simple and complex experimental designs. As a method…

NanoStriDE
Desktop

NanoStriDE NanoString Differential Expression

Allows biologists to take raw data produced by a NanoString nCounter analysis…

Allows biologists to take raw data produced by a NanoString nCounter analysis system and easily interpret differential expression analysis of this data represented through a heatmap.

NanoStringNorm
Desktop

NanoStringNorm

A set of tools for normalizing, diagnostics and visualization of NanoString…

A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data. Key features include an extensible environment for method comparison and new algorithm development,…

nSolver…
Desktop

nSolver Analysis Software

A data analysis program that offers nCounter users the ability to quickly and…

A data analysis program that offers nCounter users the ability to quickly and easily QC, normalize, and analyze their data without having to purchase additional software packages.

Most Popular Tools

NanoStriDE
Desktop

NanoStriDE NanoString Differential Expression

Allows biologists to take raw data produced by a NanoString nCounter analysis…

Allows biologists to take raw data produced by a NanoString nCounter analysis system and easily interpret differential expression analysis of this data represented through a heatmap.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.