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NAPS specifications

Information


Unique identifier OMICS_08395
Name NAPS
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


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Publication for NAPS

NAPS in publications

 (3)
PMCID: 4595337
PMID: 26439842
DOI: 10.1371/journal.pone.0139731

[…] and the disordered nature of a protein may offer an additional layer of information that can complement and enhance the performance of rna-binding site prediction software, such as rnabindr [], naps[] or rnaprob[], even though some of these methods already take evolutionary information into account. while the accuracy of these tools is progressively getting higher, it was shown recently […]

PMCID: 3763535
PMID: 23788679
DOI: 10.1093/nar/gkt544

[…] standalone programs (). the methods are bindn (), bindn+ (), bindn-rf (), dbs-pred (), dbs-pssm (), dnabindr (), dp-bind with three categories, binary, blosum and pssm encoding (), metadbsite () and naps (). the details about the name, features, technique, reference and link for the methods used in the present work are listed in supplementary table s1. these methods used different data sets […]

PMCID: 3289072
PMID: 22166082
DOI: 10.1186/1477-5956-9-S1-S11

[…] by magiic-pro followed by rsa screening for each test case, and compared them to the dna-binding residues predicted by a structure-based approach (displar []) and a sequence-based approach (naps []) proposed recently. the results of the analysis is provided in table , where the precision rate is defined by the number of true positives (tps) divided by the number of predicted residues, […]


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NAPS institution(s)
Department of Bioengineering/Bioinformatics, University of Illinois at Chicago, Chicago, IL, USA

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