NARROMI specifications

Information


Unique identifier OMICS_16688
Name NARROMI
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for NARROMI

NARROMI citations

 (2)
library_books

Combined analysis of gene regulatory network and SNV information enhances identification of potential gene markers in mouse knockout studies with small number of samples

2015
BMC Med Genomics
PMCID: 4460612
PMID: 26044212
DOI: 10.1186/1755-8794-8-S2-S10

[…] , but how much data is needed for GRN construction is not rigorously studied. In this study, we had enough omics data for the network construction, therefore we were able to use a simple method using NARROMI[]. However, when the amount of omics data for network construction is not enough, special techniques such as low order partial correlation based methods [] should be considered. Second, removi […]

library_books

A New Asynchronous Parallel Algorithm for Inferring Large Scale Gene Regulatory Networks

2015
PLoS One
PMCID: 4373852
PMID: 25807392
DOI: 10.1371/journal.pone.0119294

[…] including correlation based estimation methods [], model-based methods [, , ], and mutual information(MI)-based methods, such as CMI [], MI-CMI [], MI3 [] and PCA-CMI [] and IPCA-CMI []. Furthermore, NARROMI [] combined regression-based optimization and information theory- based MI to achieve improved accuracy.However, the above approaches suffer from two limitations when handling networks with la […]

NARROMI institution(s)
Institute of Systems Biology, Shanghai University, Shanghai, China; School of Communication and Information Engineering, Shanghai University, Shanghai, China; LERIA, University of Angers, Angers, France; Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; Department of Computer Science, School of Electronics and Information Engineering, Tongji University, Shanghai, China
NARROMI funding source(s)
Supported by Sino-French Cai Yuanpei Program from CSC (20106050), NSFC (91029301, 61134013, 61072149, 91130032, 61103075, 31100949), Innovation Program of Shanghai Municipal Education Commission (13ZZ072), Shanghai Pujiang Program, Chief Scientist Program of SIBS from CAS (2009CSP002), Knowledge Innovation Program of SIBS of CAS (2011KIP203), the Knowledge Innovation Program of CAS (KSCX2-EW-R-01), National Center for Mathematics and Interdisciplinary Sciences of CAS, and the FIRST Program initiated by CSTP, Radapop and LigeRO Projects (2009-2013, Pays de La Loire Region, France).

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