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NARWHAL | A primary analysis pipeline for NGS data

Automates the primary analysis of massive parallel sequencing data. NARWHAL is a sequence analysis pipeline that allows for the automated processing and analysis of different and multiplexed datasets obtained from Illumina sequencers and easy alignment of individual samples to the reference genome of choice using predefined alignment profiles. The software provides a coherent data analysis workflow with minimal hands-on time, a reduced chance of human error and faster analysis.

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NARWHAL classification

NARWHAL specifications

Unique identifier:
OMICS_01130
Interface:
Command line interface
Input data:
The location of the Illumina Qseq files, the output folder and a sample-sheet.
Biological technology:
Illumina
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ, SAM and BAM
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
BASH, R, gzip, pdflatex, nice, gawk, GCC (optional), libz (optional), Bowtie, BWA, TopHat, SAMtools, BAMtools

NARWHAL distribution

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NARWHAL support

Maintainer

  • Wilfred van IJcken <>

Additional information

User Guide: https://trac.nbic.nl/narwhal/wiki/userguide

Credits

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Publications

Institution(s)

Center for Biomics, Department of Cell Biology, Erasmus Medical Center, Rotterdam, Netherlands; Bioinformatics Centre (NBIC), Nijmegen, Netherlands

Funding source(s)

Supported by Netherlands BioInformatics Center as part of the BioAssist programme and NGI Booster grant from the Netherlands Genomics Initiative.

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