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NasoniaBase specifications

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Unique identifier OMICS_10876
Name NasoniaBase
Restrictions to use None
Maintained Yes

Publication for NasoniaBase

NasoniaBase citations

 (3)
library_books

Transcriptome profiling of Diachasmimorpha longicaudata towards useful molecular tools for population management

2016
BMC Genomics
PMCID: 5059965
PMID: 27729028
DOI: 10.1186/s12864-016-2759-2

[…] e package, specifically Nucmer, [] and the Circos visualization tool [] were used. The Honey Bee Genome Sequencing Consortium assembly Amel_4.5 and Official Gene Set OGSv3.2 (www.beebase.org) and the NasoniaBase genome Assembly Nvit_1.0 (http://hymenopteragenome.org/nasonia/) databases were used. […]

library_books

Characterizing the Infection Induced Transcriptome of Nasonia vitripennis Reveals a Preponderance of Taxonomically Restricted Immune Genes

2013
PLoS One
PMCID: 3873987
PMID: 24386321
DOI: 10.1371/journal.pone.0083984

[…] We aligned our RNA-seq reads to the N. vitripennis reference genome version 1.0 , available from NasoniaBase. We used a combination of TopHat2 and Stampy to map our sequencing reads to the reference scaffolds, in order to leverage the unique strengths of each program and maximize mapping succes […]

library_books

Development of a Nasonia vitripennis outbred laboratory population for genetic analysis

2013
Mol Ecol Resour
PMCID: 4260118
PMID: 24215457
DOI: 10.1111/1755-0998.12201

[…] mina protocols. The unpaired library was run on a single lane and the paired-end library on five lanes of an Illumina Genome Analyzer II (Illumina, San Diego, CA, USA). Sequence data were provided to NasoniaBase () and submitted to the NCBI Short Read Archive with accession no. SRP022050.Reads were aligned to the v2.0 of the N.┬ávitripennis genome () using Mosaik Aligner v1.1.0021 (https://code.goo […]


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NasoniaBase institution(s)
Department of Biology, Georgetown University, WA, DC, USA; Department of Animal Science, Texas A&M University, College Station, TX, USA

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