NASP pipeline

NASP specifications

Information


Unique identifier OMICS_11190
Name NASP
Alternative name The Northern Arizona SNP Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTA, BAM, SAM, VCF, FASTQ, FASTQ.GZ
Output format matrix, VCF, FASTA
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.0.0
Stability Stable
Requirements SAMmtools, Trimmomatic, MUMmer
Maintained Yes

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Maintainer


  • person_outline Darrin Lemmer <>

Publication for The Northern Arizona SNP Pipeline

NASP citation

2017
PMCID: 5727414

[…] and assembly of the genome of p.┬ádestructans 20631-21, collected in new york in 2008 (26) (ncbi genbank assembly accession no. gca_001641265.1), was used as a reference for snp discovery using the northern arizona snp pipeline (nasp) version 1.0.2 (58). with nasp, illumina paired-end reads were aligned to the reference genome with the burrows-wheeler aligner (59) version 0.7.5a mem […]

NASP institution(s)
Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, AZ, USA; Translational Genomics Research Institute, Flagstaff, AZ, USA; The George Washington University, Washington DC, USA; University of New Hampshire, Durham, NH, USA

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