NastyBugs specifications

Information


Unique identifier OMICS_24679
Name NastyBugs
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data SRA accession numbers (ERR or SRR) or files.
Input format FASTQ
Output data A table with the next columns: RefSeq accession number (Nucleotide), Genus, Resistance gene, ARO (Antibiotic Resistance Ontology) accession number, Score; Dot plot showing relative abundance of antimicrobial resistance/bacterial species in metagenomic sample and pie chart visualization of bacterial abundance in the given dataset using Krona.
Output format CSV,TSV
Operating system Unix/Linux
Programming languages Shell (Bash)
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
Magic-BLAST, SAMtools, FASTX-Toolkit, Docker
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainers


  • person_outline Hsinyi Tsang
  • person_outline Ben Busby
  • person_outline Greg Fedewa
  • person_outline Sherif Farag
  • person_outline Matthew Moss

Publication for NastyBugs

NastyBugs institution(s)
Center for Biomedical and Information Technology, national Cancer Institute, National Institute of Health, Gaithersburgh, MD, USA; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Bioinformatics, University of California, San Francisco, CA, USA; Bioinformatics and Computational Biology, Eshelman School of Pharmacy, University of North Carolina Chapel Hill, Chapel Hill, NC, USA; Department of Computer Science, Donald Bren School of Information and Computer Sciences, University of California, Irvine, CA, USA; Department of Pathobiology, Scholl of Veterinary Medicine, University of Pennsylvania, PA, USA; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA
NastyBugs funding source(s)
Supported by the Intramural Research Program of the NLM and NCI Contract #D14PD00826.

NastyBugs reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review NastyBugs