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National and ethnic variation databases | Genome variant analysis

Many general and locus specific mutation disease databases have been established (Ruangrit et al., 2008; Tan et al., 2006; Kleanthous et al., 2006; Teebi et al., 2002). It is also well known that different ethnic backgrounds may have different…
IGSR
Dataset

IGSR International Genome Sample Resource

Expands in data type and population diversity the resources from the 1000…

Expands in data type and population diversity the resources from the 1000 Genomes Project. IGSR represents the largest open collection of human variation data and provides easy access to these…

PanSNPdb
Dataset

PanSNPdb Pan-Asian SNP Consortium

Offers genome structural information pertaining to Asian populations in a…

Offers genome structural information pertaining to Asian populations in a familiar graphical comparative view. PanSNPdb offers pre-computed information of linkage disequilibrium (LD) blocks and their…

Taiwan View
Dataset

Taiwan View

Provides access to the annotations and summary statistics of The Taiwan Biobank…

Provides access to the annotations and summary statistics of The Taiwan Biobank (TWB). Taiwan View is a database that contains chromosome, position, single nucleotide polymorphism (SNP) ID, reference…

SISu
Dataset

SISu Sequencing Initiative Suomi

Offers a way to search for data on sequence variants in Finns. SISu provides…

Offers a way to search for data on sequence variants in Finns. SISu provides valuable summary data for researchers and clinicians as well as other people having an interest in genetics in Finland.…

TPMD
Dataset

TPMD Taiwan Polymorphic Marker Database

Offers experimental details and marker information allelotyped in population of…

Offers experimental details and marker information allelotyped in population of Taiwan. TPMD is a shared database and resources for genotyping with microsatellite markers that reduces cost and errors…

VCGDB
Dataset

VCGDB Virtual Chinese Genome Database

Supports real-time high-performance searches using a web search engine and a…

Supports real-time high-performance searches using a web search engine and a genome browser. VCGDB is a dynamic genome database of the Chinese population based on whole-genome sequencing (WGS) of 194…

iJGVD
Dataset

iJGVD Integrative Japanese Genome Variation Database

Provides allele frequency data for more than 4 000 000 autosomal single…

Provides allele frequency data for more than 4 000 000 autosomal single nucleotide variants (SNVs). iJGVD contains SNV alleles, genomic positions based on the GRCh37/hg19 coordinates, allele…

KoVariome
Dataset

KoVariome

Provides access to single nucleotide polymorphism (SNP) data for Korean…

Provides access to single nucleotide polymorphism (SNP) data for Korean population. KoVariome is a comprehensive database of genomic variations and corresponding metadata, constructed based on whole…

COGR
Dataset

COGR Canadian Open Genetics Repository

A unified, open-access, clinical-grade genetic database that draws from the…

A unified, open-access, clinical-grade genetic database that draws from the genetic holdings in place at clinical labs and hospitals across Canada. As clinical laboratories adopt modern genomics…

HGVD
Dataset

HGVD Human Genetic Variation Database

A reference database of genetic variations in the Japanese population. We…

A reference database of genetic variations in the Japanese population. We collected exomic sequencing data of 1208 Japanese individuals from five institutes and a data set of common variants…

MFMD
Dataset

MFMD Mediterranean Founder Mutation Database

A comprehensive database established to offer a web-based access to founder…

A comprehensive database established to offer a web-based access to founder mutation data in Mediterranean population. The database provides an overview about the spectrum of founder mutations found…

JG-SNP
Dataset

JG-SNP Japanese Single Nucleotide Polymorphism for Geriatric Research

Collects information about genetic polymorphisms topic. JG-SNP is an online…

Collects information about genetic polymorphisms topic. JG-SNP is an online resource that informs about allele frequencies of single nucleotide polymorphisms (SNPs) of candidate genes and…

FinDis
Dataset

FinDis Finnish Disease Database

Compiles information about genes for over 30 of the monogenic diseases behind…

Compiles information about genes for over 30 of the monogenic diseases behind the Finnish disease heritage. FinDis was first published in 2004 and recently updated by adding a current nomenclature…

CTGA
Dataset

CTGA Catalogue of Transmission Genetics in Arabs

Provides information on the occurrence of genetic disorders in the Arab…

Provides information on the occurrence of genetic disorders in the Arab populations. Information in CTGA is drawn from published research and mined hospital records. The database offers web-based…

SNP@Ethnos
Dataset

SNP@Ethnos

A public database of ethnically variant single-nucleotide polymorphisms (ESNPs)…

A public database of ethnically variant single-nucleotide polymorphisms (ESNPs) with annotation information that currently contains 100 736 ESNPs from 10 138 genes. The SNP@Ethnos database can be…

SweGen
Dataset

SweGen

A database which hosts whole-genome variant frequencies for 1000 Swedish…

A database which hosts whole-genome variant frequencies for 1000 Swedish individuals generated within the SweGen project. SweGen is intended to be used as a resource for the research community and…

TMC-SNPdb
Dataset

TMC-SNPdb Tata Memorial Centre-SNP database

A database of ‘normal’ germline variants derived from Indian (nonEuropean…

A database of ‘normal’ germline variants derived from Indian (nonEuropean Caucasian population). TMC-SNPdb is the first open source, flexible, upgradable, and freely available single nucleotide…

Amish,…
Dataset

Amish, Mennonite, and Hutterite Genetic Disorders Database

Assists in research and diagnosis of genetic conditions in Anabaptist groups.…

Assists in research and diagnosis of genetic conditions in Anabaptist groups. The Amish, Mennonite, and Hutterite Genetic Disorders Database focuses on single-gene Mendelian disorders and the…

Thai CNV…
Dataset

Thai CNV database

A reference CNV database for Thais. Thai CNV database contains CNVs from 3,017…

A reference CNV database for Thais. Thai CNV database contains CNVs from 3,017 unrelated Thai individuals whose high-resolution Illumina SNP array-derived GWAS data were previously published. These…

ThaiSNPdb
Dataset

ThaiSNPdb Thailand SNP database

Determines Single Nucleotide Polymorphisms (SNPs) and Copy Number Variations…

Determines Single Nucleotide Polymorphisms (SNPs) and Copy Number Variations (CNVs) in Thai population by using 5th generation Affymetrix SNP genotyping array, each array contains approximately…

MyHVPDb
Dataset

MyHVPDb Malaysian Node of the Human Variome Project database

A specialized database was developed to store and manage the data based on…

A specialized database was developed to store and manage the data based on genetic variations which also associated with health and disease of Malaysian ethnic groups. MyHVPDb provides only…

ThaiMUT
Dataset

ThaiMUT Thailand Mutation and Variation database

Offers a web-based access to genetic mutation and variation information in Thai…

Offers a web-based access to genetic mutation and variation information in Thai population. The mutation data cataloged in ThaiMUT database were derived from journal articles available in PubMed and…

Cypriot…
Dataset

Cypriot National Genetic Database

An online repository of information about inherited disorders in the Cypriot…

An online repository of information about inherited disorders in the Cypriot population. You may search the Cypriot National Genetic Database by selecting a population, an ethnic group and finally…

HVDB
Dataset

HVDB Human Variation Database

Stores information about human mutation data. HVDB contains several types of…

Stores information about human mutation data. HVDB contains several types of information such as structural variations and repeat variations with statistical genetics analysis results. It supplies…

KRGDB
Dataset

KRGDB Korean Reference Genome DB

Aims to furnish users with a comprehensive map of the Korean genomic variants.…

Aims to furnish users with a comprehensive map of the Korean genomic variants. KRGDB is a genome variants database that contains information from about 622 healthy individuals. It can be useful for…

Turkish Human…
Dataset

Turkish Human Mutation Database

Provides a database about human mutations of the turkish population.

Provides a database about human mutations of the turkish population.

IGVBrowser
Dataset

IGVBrowser

Provides allele and genotype frequency data generated in the Indian Genome…

Provides allele and genotype frequency data generated in the Indian Genome Variation Consortium (IGVC) project. The database harbors 4,229 SNPs from more than 900 candidate genes in contrasting…

Polymorphix
Dataset

Polymorphix

Provides access to information about sequence polymorphism. Polymorphix is a…

Provides access to information about sequence polymorphism. Polymorphix is a database, dedicated to within-species sequence polymorphism, that organizes GenBank/EMBL sequences into within-species…

KOVA
Dataset

KOVA Korean Variant Archive

Provides a whole exome sequencing (WES)-based genomic variant catalog from…

Provides a whole exome sequencing (WES)-based genomic variant catalog from Korean individuals. KOVA is a database that compiles high-quality coding variant data from about 1,055 healthy Korean…

KGVDB
Dataset

KGVDB Korean Genomic Variant Database

Provides multi-class CNV regions and well-tagged SNP information. The data were…

Provides multi-class CNV regions and well-tagged SNP information. The data were obtained from 4694 individuals using two different genotyping platforms and publicly available CNV data. The major…

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