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NaviCell | Web Service for network-based data visualization

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A tool for network-based visualization of ‘omics’ data which implements several data visual representation methods and utilities for combining them together. NaviCell Web Service uses Google Maps and semantic zooming to browse large biological network maps, represented in various formats, together with different types of the molecular data mapped on top of them. For achieving this, the tool provides standard heatmaps, barplots and glyphs as well as the novel map staining technique for grasping large-scale trends in numerical values (such as whole transcriptome) projected onto a pathway map. The web service provides a server mode, which allows automating visualization tasks and retrieving data from maps via RESTful (standard HTTP) calls. Bindings to different programming languages are provided (Python and R).

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NaviCell classification

NaviCell specifications

Unique identifier:
OMICS_08353
Restrictions to use:
None
Stability:
Stable
Interface:
Web user interface, Application programming interface
Computer skills:
Basic
Maintained:
Yes

NaviCell support

Maintainer

  • Andrei Zinovyev <>

Credits

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Publications

Institution(s)

Institut Curie, Paris, France

Funding source(s)

Agilent Thought Leader Award #3273; ASSET European Union Framework Program 7 project under grant agreement FP7-HEALTH-2010-259348; grant ‘Projet Incitatif et Collaboratif Computational Systems Biology Approach for Cancer’ from Institut Curie

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.