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Associated diseases

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NaviCell specifications

Information


Unique identifier OMICS_08353
Name NaviCell
Interface Web user interface, Application programming interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Andrei Zinovyev <>
  • person_outline Inna Kuperstein <>

Additional information


https://navicell.curie.fr/pages/faq.html

Publications for NaviCell

NaviCell in publications

 (5)
PMCID: 5795886
PMID: 29286336
DOI: 10.3390/s18010085

[…] authors contributed equally to this work., this paper demonstrates a commercial-level field-portable lens-free cell analyzer called the navicell (no-stain and automated versatile innovative cell analyzer) capable of automatically analyzing cell count and viability without employing an optical microscope and reagents. based […]

PMCID: 5543083
PMID: 28775339
DOI: 10.1038/s41467-017-00268-2

[…] dimers, and oligomers (supplementary data ). by assigning web links to the annotations in our map, we turned it into an interactive resource., the web version of the e2f1 map was constructed using navicell. in addition, the map was translated to cytoscape, a format suitable for the use of network analysis tools. for the sake of improving the visualization, the celldesigner map (fig. ) pools […]

PMCID: 5860170
PMID: 29077811
DOI: 10.1093/bioinformatics/btx441

[…] possible to community standards like systems biology graphical notation (sbgn) ()., the challenge of pathway data visualization has been approached by several resources. in cases like minerva () and navicell () the google map engine was adopted to visualize pathways using sbgn. wikipathways () and kegg () display pathways using an in-house developed viewer. finally, other resources like pathway […]

PMCID: 4980033
PMID: 27509052
DOI: 10.1371/journal.pbio.1002530

[…] by the quality and scope of the reference pathway diagram. there are a number of tools that currently support data visualisation in the context of networks and pathways, including celldesigner [], navicell [], kegg mapper [], reactomefiviz [], ipath [], and medusa []. as knowledge of biological interactions grows, there is, therefore, a need to construct better models to support these types […]

PMCID: 4214431
PMID: 25295490
DOI: 10.1038/ncomms6005

[…] with the emt programme (). interactive online version of the map accompanied by detailed description of the molecular mechanisms and the comprehensive list of references can be found at https://navicell.curie.fr/pages/signalling_network_emt_regulation_description.html., we performed structural analysis and simplification of the emt network (; see methods section) that highlighted […]


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NaviCell institution(s)
Institut Curie, PSL Research University, Paris, France; INSERM, U900, Paris, France; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, Paris, France
NaviCell funding source(s)
Supported by the COLOSYS grant ANR-15- CMED-0001-04, provided by the Agence Nationale de la Recherche under the frame of ERACoSysMed-1, the ERA-Net for Systems Medicine in clinical research and medical practice, by INSERM Plan Cancer N BIO2014-08 COMET grant under ITMO Cancer BioSys program, and by MASTODON program by CNRS (project APLIGOOGLE).

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