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NaviCom

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A web application for visualization of multi-level omics data on top of biological network maps. NaviCom uses a large datasets from omics data resources to displaying them on a molecular network maps with optimized visualization settings. Navicom is a link between a resource of large-scale cancer omics data (cBioPortal) and a data visualization web service (NaviCell). Ultimately, this tool allows to create a comprehensive molecular portraits of cancer, identifying specific patterns in the data for a better disease subtypes classification.

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NaviCom classification

NaviCom specifications

Interface:
Web user interface
Output data:
Barplots, Heatmaps, Glyphs, Map staining, Navicom display settings, Complete data type display mode, Triple data type display mode, Double data type display mode, Single data type display mode
Computer skills:
Basic
Source code URL:
https://github.com/sysbio-curie/navicom
Restrictions to use:
None
Programming languages:
Python
Stability:
Stable
Maintained:
Yes

NaviCom support

Documentation

Maintainer

  • Inna Kuperstein <>

Credits

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Publications

Institution(s)

Institut Curie, Paris, France; Inserm U900, Paris, France; Mines Paris Tech, Fontainebleau, France; PSL Research University, Paris, France; Ecole Nationale Supérieure, Paris, France; France Sysra, Yerres, France; Institute of Pathology and Institute for Theroretical Biology, Charite Universitatsmedizin Berlin, Berlin, Germany

Funding source(s)

This work was supported by The Agilent Thought Leader Award (grant n°3273); ASSET European Union Framework Program 7 project (grant n°FP7-HEALTH-2010-259348); Institut Curie (grant to Projet Incitatif et Collaboratif Computational Systems Biology Approach for Cancer); the French Government (grant Investissements d’Avenir); the Agence Nationale de la Recherche (grant n°ANR-11-BINF-0001) and CNRS with APLIGOOGLE program.

Link to literature

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