NBP-Seq specifications


Unique identifier OMICS_31139
Name NBP-Seq
Alternative name Negative Binomial Process


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Publication for Negative Binomial Process

NBP-Seq citation


The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

PLoS Genet
PMCID: 3688495
PMID: 23818858
DOI: 10.1371/journal.pgen.1003496

[…] p for the cyclosporin inducing experiment. Reads were mapped to gene models using GENE-Counter . Differential expression was analyzed in GENE-Counter, which utilizes a negative binomial model and the NBP-Seq R package to model differential gene expression . For the time course experiment, the three biological replicates in SM media were compared with the three biological replicates in the SDB medi […]

NBP-Seq institution(s)
Department of Electrical & Computer Engineering, Center for Bioinformatics & Genomic Systems Engineering, Texas A&M University, TX, USA; Department of Information, Risk, & Operations Management and Department of Statistics and Data Sciences, The University of Texas at Austin, Austin, TX, USA
NBP-Seq funding source(s)
Supported by a CAREER award 1553281 from the U.S. National Science Foundation.

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