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|Alternative name||Neighbor Corrected IDP Library|
|Interface||Web user interface|
|Restrictions to use||None|
|Input data||A protein sequence.|
Publication for Neighbor Corrected IDP Library
Solution NMR structure of the TRIM21 B box2 and identification of residues involved in its interaction with the RING domain
[…] s as α-helices and β-sheets. Backbone chemical shifts and sequence data was used as input to the CSI 3.0 server in order to identify secondary structure . Random coil shift were predicted using the ncIDP (Neighbor Corrected IDP Library) server  based on the amino acid sequence of TRIM21 B-box286-130. The chemical shift values of the NH, H, Hα, CO, Cα and Cβ atoms of the assigned residues were […]
Probing Medin Monomer Structure and its Amyloid Nucleation Using 13C Direct Detection NMR in Combination with Structural Bioinformatics
[…] shifts (see BMRB ID: 27021). These shifts were used to probe secondary structure propensities using Secondary Structure Propensity (SSP), neighbour corrected Intrinsically Disordered Protein Library (ncIDP) and the Collaborative Computing Project for NMR (CCPN) software Analysis. SSP provides a score for secondary structure propensity for carbon shifts with negative values indicating β-strand and […]
Characterization of ERM transactivation domain binding to the ACID/PTOV domain of the Mediator subunit MED25
[…] fts compiled from strictly disordered proteins. Secondary chemical shifts 13Cα–13Cβ were here calculated as indicators for residual local secondary structure based on the random coil values database (ncIDP) from Tamiola et al. () that are neighbour-corrected. The secondary structure propensity (SSP) analysis compares the Cα and Cβ values not only to the random coil values expected in a strictly di […]
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