NCL statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool NCL
info

Tool usage distribution map

This map represents all the scientific publications referring to NCL per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left File parsing-extraction chevron_right
Want to access the full stats & trends on this tool?

Protocols

NCL specifications

Information


Unique identifier OMICS_20523
Name NCL
Alternative name Nexus Class Library
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.1.18
Stability Stable
Maintained Yes

Download


download.png
sourceforge.png

Versioning


No version available

Maintainers


  • person_outline Paul Lewis
  • person_outline Mark Holder

Publication for Nexus Class Library

NCL citations

 (2)
call_split

Identification of the vascular plants of Churchill, Manitoba, using a DNA barcode library

2012
BMC Ecol
PMCID: 3538695
PMID: 23190419
DOI: 10.1186/1472-6785-12-25
call_split See protocol

[…] & ITS2). Analysis was performed using Maximum parsimony (MP) to establish if a particular taxon formed a monophyletic clade. Prior to analysis, fasta files were converted into Nexus format using the Nexus Class Library []. PAUP was then used to implement Parsimony analysis. Support for branching patterns was assessed using the parsimony ratchet []. Consensus tree was generated from a set of the m […]

library_books

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data

2007
BMC Bioinformatics
PMCID: 1913543
PMID: 17559666
DOI: 10.1186/1471-2105-8-191

[…] sting software that uses NEXUS is mostly embedded in applications code such as PAUP* []. Some exceptions are the NEXUS methods provided by open-source toolkits such as BioPerl [], and by NCL [], for "NEXUS Class Library", a special purpose library written in C++. Most such implementations provide limited coverage of the NEXUS standard, and focus only on input and output of files, without providing […]


Want to access the full list of citations?
NCL institution(s)
Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
NCL funding source(s)
Supported by grant 98-4-5 ME from the Alfred P. Sloan Foundation/National Science Foundation.

NCL reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review NCL