The nCounter Analysis System (NanoString Technologies, Seattle, WA) is a technology that enables the digital quantification of multiplexed target RNA molecules using color-coded molecular barcodes and single-molecule imaging (Geiss et al., 2008). This system is an emerging…
NanoStringDiff
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NanoStringDiff

Offers a comprehensive and general framework to characterize NanoString…

Offers a comprehensive and general framework to characterize NanoString nCounter data and to detect differential expression (DE) genes for both simple and complex experimental designs. As a method…

NAPPA
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NAPPA

An algorithm for the pre-processing of mRNA data from the NanoString nCounter…

An algorithm for the pre-processing of mRNA data from the NanoString nCounter software, working from the output RCC files saved as a tab delimited text file and imported into R. NAPPA has been…

NanoStringNorm
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NanoStringNorm

A set of tools for normalizing, diagnostics and visualization of NanoString…

A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data. Key features include an extensible environment for method comparison and new algorithm development,…

nSolver…
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nSolver Analysis Software

A data analysis program that offers nCounter users the ability to quickly and…

A data analysis program that offers nCounter users the ability to quickly and easily QC, normalize, and analyze their data without having to purchase additional software packages.

NanoStriDE
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NanoStriDE NanoString Differential Expression

Allows biologists to take raw data produced by a NanoString nCounter analysis…

Allows biologists to take raw data produced by a NanoString nCounter analysis system and easily interpret differential expression analysis of this data represented through a heatmap.

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