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ncRNA-related SNPs detection (small RNA-seq analysis)

Several single nucleotide polymorphisms (SNPs) in ncRNA genes or target sites have been proved to be associated with human diseases by affecting the ncRNA-mediated regulatory function.

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PolymiRTS…
Dataset

PolymiRTS Database

An integrated platform for analyzing the functional impact of genetic…

An integrated platform for analyzing the functional impact of genetic polymorphisms in miRNA seed regions and miRNA target sites. The browse and search pages of PolymiRTS allow users to explore the…

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RNAsnp Web…
Web

RNAsnp Web Server

An efficient method to predict the effect of SNPs on local RNA secondary…

An efficient method to predict the effect of SNPs on local RNA secondary structure based on the RNA folding algorithms implemented in the Vienna RNA package.

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MicroSNiPer
Web

MicroSNiPer

Predicts the impact of a SNP on putative microRNA targets. MicroSNiPer…

Predicts the impact of a SNP on putative microRNA targets. MicroSNiPer interrogates the 3'-untranslated region and predicts if a SNP within the target site will disrupt/eliminate or…

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miRdSNP
Dataset

miRdSNP

A database of manually curated dSNPs on the 3'UTRs of human genes from…

A database of manually curated dSNPs on the 3'UTRs of human genes from available publications in PubMed.

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lncRNASNP
Dataset

lncRNASNP

A database providing comprehensive resources of single nucleotide polymorphisms…

A database providing comprehensive resources of single nucleotide polymorphisms (SNPs) in human/mouse lncRNAs. It contains SNPs in lncRNAs, SNP effects on lncRNA structure and lncRNA:miRNA binding.…

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SubmiRine
Desktop

SubmiRine

An open-source software package for predicting microRNA target site variants…

An open-source software package for predicting microRNA target site variants (miR-TSVs) from clinical genomic data sets that measure miRNA expression, gene expression, and genotype. The main benefits…

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mrSNP
Web

mrSNP

Provides a web service for researchers working especially with RNA-Seq Data, to…

Provides a web service for researchers working especially with RNA-Seq Data, to predict the impact of a SNP in a 3UTR on miRNA binding.

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MSbind
Desktop

MSbind

Calculates features of metastable conformations determined by putative miRNA…

Calculates features of metastable conformations determined by putative miRNA binding sites. MSbind is a Perl package that sorts meta-stable structures by number of base pairings within the target…

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