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ncRNA-related SNPs detection (small RNA-seq analysis)

High-throughput sequencing software tools > Small RNA sequencing software tools

Several single nucleotide polymorphisms (SNPs) in ncRNA genes or target sites have been proved to be associated with human diseases by affecting the ncRNA-mediated regulatory function.

lncRNASNP

OMIC_06099

lncRNASNP

A database providing comprehensive resources of single nucleotide polymorphisms (SNPs) in…

A database providing comprehensive resources of single nucleotide polymorphisms (SNPs) in human/mouse lncRNAs. It contains SNPs in lncRNAs, SNP effects on lncRNA structure and lncRNA:miRNA binding. LncRNASNP also integrates GWAS data and miRNA…

MicroSNiPer

OMIC_00388

MicroSNiPer

Predicts the impact of a SNP on putative microRNA targets. MicroSNiPer interrogates the…

Predicts the impact of a SNP on putative microRNA targets. MicroSNiPer interrogates the 3′-untranslated region and predicts if a SNP within the target site will disrupt/eliminate or enhance/create a microRNA binding site. This application…

miRdSNP

OMIC_00389

miRdSNP

A database of manually curated dSNPs on the 3’UTRs of human genes from available…

A database of manually curated dSNPs on the 3’UTRs of human genes from available publications in PubMed.

mrSNP

OMIC_03509

mrSNP

Provides a web service for researchers working especially with RNA-Seq Data, to predict…

Provides a web service for researchers working especially with RNA-Seq Data, to predict the impact of a SNP in a 3UTR on miRNA binding.

MSbind

OMIC_00390

MSbind

Calculates features of meta-stable RNA secondary structure target sites.

Calculates features of meta-stable RNA secondary structure target sites.

PolymiRTS Database

OMIC_00391

PolymiRTS Database

An integrated platform for analyzing the functional impact of genetic polymorphisms in…

An integrated platform for analyzing the functional impact of genetic polymorphisms in miRNA seed regions and miRNA target sites. The browse and search pages of PolymiRTS allow users to explore the relations between the PolymiRTSs and gene…

RNAsnp Web Server

OMIC_00392

RNAsnp Web Server

An efficient method to predict the effect of SNPs on local RNA secondary structure based…

An efficient method to predict the effect of SNPs on local RNA secondary structure based on the RNA folding algorithms implemented in the Vienna RNA package.

SubmiRine

OMIC_07987

SubmiRine

An open-source software package for predicting microRNA target site variants (miR-TSVs)…

An open-source software package for predicting microRNA target site variants (miR-TSVs) from clinical genomic data sets that measure miRNA expression, gene expression, and genotype. The main benefits of SubmiRine are that it allows for de novo…