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Protocols

NDAR specifications

Information


Unique identifier OMICS_04610
Name NDAR
Alternative name National Database for Autism Research
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Dan Hall

Publication for National Database for Autism Research

NDAR citations

 (12)
library_books

XPAT: a toolkit to conduct cross platform association studies with heterogeneous sequencing datasets

2017
Nucleic Acids Res
PMCID: 5888834
PMID: 29294048
DOI: 10.1093/nar/gkx1280

[…] ormance of XPAT by conducting two whole-exome case-control analyses involving 272 women with ovarian cancer and 783 women with breast cancer, and a shared control set of 1722 women. The controls from NDAR were unaffected mothers of offspring with ASD. Other than ASD status, phenotype information was unavailable for the controls and thus a small proportion may have been misclassified, although the […]

call_split

Genetic testing including targeted gene panel in a diverse clinical population of children with autism spectrum disorder: Findings and implications

2017
PMCID: 5902398
PMID: 29271092
DOI: 10.1002/mgg3.354
call_split See protocol

[…] hort, we retrieved whole exome sequence variant call data for individuals sequenced from the Simons Simplex Collection by Sanders et al. () and deposited in the National Database for Autism Research (NDAR). These variants were first converted from hg18 to hg19 coordinates using LiftoverVcf from Picard Tools (v 1.14) and filtered based on quality metrics originally published by Sanders et al. (). R […]

library_books

Next Generation Sequencing Mitochondrial DNA Analysis in Autism Spectrum Disorder

2017
PMCID: 5573912
PMID: 28419775
DOI: 10.1002/aur.1792

[…] with shared variants is presented in Table S1. Five VOI present in 4 mtDNA genes, MT‐ND5, MT‐CO1, MT‐CO3 and MT‐ATP6, and one nDNA VOI in NDUFS4 are shown in Table . Exome sequences are deposited in NDAR (https://ndar.nih.gov/edit_collection.html?id=1919).The most compelling finding in our study was the identification of two MT‐ND5 VOIs, c.13528A > G A13528G (Tau398Asp) and c.13565C > T (Ser410Ph […]

library_books

Cyberinfrastructure for Open Science at the Montreal Neurological Institute

2017
Front Neuroinform
PMCID: 5216036
PMID: 28111547
DOI: 10.3389/fninf.2016.00053

[…] iobanking studies are defined on a study-by-study basis, while their re-utilization is also promoted across studies, compliant (where possible) with conventions such as BIDS (Gorgolewski et al., ) or NDAR (Hall et al., ). Prospectively, LORIS plans to adopt ontologies under development by the NIDM initiative to formally and uniformly describe raw data, terms, workflows and derived data (Maumet et […]

library_books

Neural computations underlying inverse reinforcement learning in the human brain

2017
eLife
PMCID: 5662289
PMID: 29083301
DOI: 10.7554/eLife.29718.017

[…] The full anonymized dataset from this study is available in the NDAR data repository https://ndar.nih.gov/ under the collection ID 2417. Summary information on the data (e.g. additional details about the experiment such as picture files or exact timings of stimuli […]

library_books

Pleiotropic Mechanisms Indicated for Sex Differences in Autism

2016
PLoS Genet
PMCID: 5147776
PMID: 27846226
DOI: 10.1371/journal.pgen.1006425

[…] z (UCSC) Genome Browser: https://genome.ucsc.edu/cgi-bin/hgLiftOverLocusZoom: http://locuszoom.sph.umich.edu/locuszoom/METASOFT: http://genetics.cs.ucla.edu/metaNational Database for Autism Research (NDAR): https://ndar.nih.gov/PLINK: http://pngu.mgh.harvard.edu/~purcell/plink/index.shtmlR—A language and environment for statistical computing: http://www.R-project.org/RefSeq Genes Database–UCSC: ht […]

Citations

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NDAR institution(s)
OMNITEC Solutions, Inc, Chinakville, MD, USA

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