NDManager protocols

View NDManager computational protocol

NDManager statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Image enhancement/ data pre-processing Data management and annotation chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

NDManager specifications

Information


Unique identifier OMICS_16699
Name NDManager
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 3.0
Computer skills Medium
Version 2.0.0
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Gyorgy Buzsaki <>

Publication for NDManager

NDManager in pipelines

 (6)
2015
PMCID: 4449271
PMID: 25849776
DOI: 10.1038/nature14273

[…] (< 1 ms) responses were found in ~5% of the units, indicating that ~95% of cells were driven polysynaptically rather than directly., spikes were detected and visually verified using the programs ndmanager and neuroscope. spike sorting involved an automated stage, performed using klustakwik, and a manual verification stage for which klusters or klustaviewa were used. detailed analysis […]

2015
PMCID: 4636356
PMID: 26544604
DOI: 10.1371/journal.pone.0142526

[…] were localized on the basis of the marks of the electrode penetrations., amplified neuronal activities were band-pass filtered (300 to 5000 hz). the raw data were first processed by neuroscope, ndmanager, klustakwik and then broken down into single unit signals by the use of klusters [, ] under manual control., we intended to classify the cn neurons in functional groups […]

2014
PMCID: 4164909
PMID: 25004203
DOI: 10.1016/j.jneumeth.2014.06.031

[…] digitized data were converted to spike2 format (version 5.13, ced). for all further analyses, data were converted to a raw binary format using tools of the freely available klusters, neuroscope, and ndmanager software suite (). eeg data were low-pass filtered with a windowed sinc filter at 100 hz and downsampled to 200 hz., spike sorting and data preprocessing were performed with the klusters, […]

2014
PMCID: 4164909
PMID: 25004203
DOI: 10.1016/j.jneumeth.2014.06.031

[…] suite (). eeg data were low-pass filtered with a windowed sinc filter at 100 hz and downsampled to 200 hz., spike sorting and data preprocessing were performed with the klusters, neuroscope, ndmanager and klustakwik software suites (). all other analyses were performed with routines based on the free toolboxes scipy 0.8 (), openelectrophy 0.2 (), running under python 2.6.6 and matlab […]

2013
PMCID: 3555117
PMID: 23355821
DOI: 10.3389/fncom.2013.00001

[…] the headstage was used to track the position of the animal. localization of electrodes was histologically confirmed to be the ca3 pyramidal layer. spike sorting was performed by using the neuroscope—ndmanager—klusters software package (hazan et al., ). for stimulation of the model neuron, a 10 min period of these recordings was used., curve fitting (figures and ) was performed using matlab (v. […]


To access a full list of citations, you will need to upgrade to our premium service.

NDManager in publications

 (9)
PMCID: 5559468
PMID: 28860992
DOI: 10.3389/fphar.2017.00536

[…] excel 2010 (microsoft, corp., united states). p-values less than 0.05 were considered statistically significant., the recorded waveforms were projected to a principle component subspace using ndmanager () and semi-automatically sorted into single neurons using klustakwik (), and kluster () respectively, according to previous studies (e.g., )., it is reported that distinct types […]

PMCID: 5804987
PMID: 28431164
DOI: 10.1093/sleep/zsx066

[…] refractory periods, and firing rates., units with an isolation distance <15 were considered potentially multiunits., lfp, emg, and eeg traces were low-pass filtered at 1250 or 1280 hz using ndmanager and its plugins(http://ndmanager.sourceforge.net). power spectra were whitened and calculated using multitaper methods and the chronux toolbox for matlab in 1-s windows., non-rem sleep […]

PMCID: 4784879
PMID: 26959638
DOI: 10.1371/journal.pone.0151180

[…] spike clustering (klustakwik), and manual verification and refining of the clusters (klustaviewa). the first step involved detecting spike waveforms in high-pass filtered traces, as in the older ndmanager software suite for tetrode recordings []. for the second step, we extracted 3 principal components from the spike waveform on each channel, and used them in an automated clustering analysis […]

PMCID: 4779992
PMID: 26947247
DOI: 10.1038/srep22728

[…] power 1401 converter and spike2 software (cambridge electronic design), and stored on a pc for off-line analysis. to obtain local field potential (lfp) signals, raw signals were first processed by ndmanager which provided both filtering and down-sampling (from 32 khz to 1250 hz) and thereafter filtered using chebyshev type ii filter (order 4) in the 100–250 hz band. sonic vizualizer was used […]

PMCID: 5818272
PMID: 26691833
DOI: 10.1038/nn.4209

[…] and electrolytic lesions at selected channels were performed. brains were kept for histological analysis., electrophysiological signals were processed using neurophysiological data manager (ndmanager, http://neurosuite.sourceforge.net/). lfp was obtained by low-pass filtering and down-sampling of the wide-band signal to 1250 hz. further data processing was performed by custom-written […]


To access a full list of publications, you will need to upgrade to our premium service.

NDManager institution(s)
Center for Molecular and Behavioral Neuroscience, Rutgers, The State University of New Jersey, Newark, NJ, USA
NDManager funding source(s)
This work was supported by National Institutes of Health (NS34994, NS43157, MH54671) and the Human Frontier Science Foundation.

NDManager reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review NDManager