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nDNA-Prot specifications

Information


Unique identifier OMICS_11859
Name nDNA-Prot
Interface Web user interface
Restrictions to use None
Input data Protein sequences
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Guo L. <>

Publication for nDNA-Prot

nDNA-Prot in publications

 (3)
PMCID: 5615366
PMID: 28927002
DOI: 10.3390/genes8090233

[…] the development of many approximate models to compute tf–dna binding affinity. there are models that aim at identifying proteins that may bind to dna based on the protein amino acid sequences (e.g., ndna-prot []) or models that focus on the prediction of protein target sites (e.g., bayespi2 []). the latter ones are useful in identifying functional tf binding sites, predicting the effects […]

PMCID: 5370107
PMID: 28350835
DOI: 10.1371/journal.pone.0174386

[…] for support vector machines that has gained wide popularity in machine learning and many other areas []. libd3c is an ensemble classifier which is based on clustering and parallel implementation []. ndna-prot proposed in [], is a new predictor to accurately identify dna-binding proteins when combines with an ensemble classifier. also, an improved protein structural classes predictor is proposed […]

PMCID: 5002159
PMID: 27565741
DOI: 10.1186/s12859-016-1201-8

[…] almost 4 times faster by computing 6 fireflies concurrently.fig. 7, in recent years, several methods were proposed to identify dbps. these methods included dnabinder [], idna-prot [], endna-prot [], ndna-prot [], dbppred [], dbd-threader [] and zou’s method []. among these methods, dnabinder, idna-prot, endna-prot, ndna-prot, dbppred and zou’s method were sequence-based methods. to ensure a fair […]


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nDNA-Prot institution(s)
School of Information Science and Technology, Xiamen University, Xiamen, Fujian, China
nDNA-Prot funding source(s)
This work was supported by the Natural Science Foundation of China (No. 61370010, No.61202011, No.81101115, No.61301251).

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