NEArender specifications

Information


Unique identifier OMICS_17780
Name NEArender
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Altered gene set (AGS), functional gene set (FGS) and global network of functional. coupling (NET).
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.5
Stability Stable
Requirements
stats, RColorBrewer, parallel, graphics, utils, data.table, rmarkdown, knitr, MASS, ROCR, hexbin, R(≥3.0.0), tinytex
Maintained Yes

Versioning


No version available

Documentation


Publication for NEArender

NEArender citation

library_books

The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes

2017
BMC Bioinformatics
PMCID: 5374598
PMID: 28361713
DOI: 10.1186/s12859-017-1532-0

[…] s a survey of main factors, including X-ray crystal resolution, experimental conditions, such as pH/temperature and binding assay, and, unexpectedly, errors in structure-affinity databases.The paper “NEArender: an R package for functional interpretation of ‘omics’ data via network enrichment analysis” by Jeggari and Alexeyenko [] introduces an R package able to transform raw “omics” features of ex […]

NEArender institution(s)
National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm, Sweden; Department of Microbiology, Tumor and Cell biology, Karolinska Institutet, Stockholm, Sweden; Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden
NEArender funding source(s)
Supported by NBIS (National Bioinformatics Infrastructure Sweden).

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