NemaFootPrinter statistics

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Citations per year

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Popular tool citations

chevron_left Gene orthology prediction Transcription factor binding site prediction Pairwise nucleotide sequence alignment chevron_right
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Tool usage distribution map

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Associated diseases

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NemaFootPrinter specifications

Information


Unique identifier OMICS_25312
Name NemaFootPrinter
Alternative name Nematode Transcription Factor Scan Through Philogenetic Footprinting
Software type Application/Script
Interface Web user interface
Restrictions to use None
Programming languages Java, Perl
Database management system MySQL
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Caenorhabditis elegans

Maintainers


  • person_outline Davide Rambaldi <>
  • person_outline Alessandro Guffanti <>
  • person_outline Paolo Morandi <>
  • person_outline Giuseppe Cassata <>

Additional information


http://bio-webout.ifom.eu/NTFootPrinter/howto.html

Publication for Nematode Transcription Factor Scan Through Philogenetic Footprinting

NemaFootPrinter in publication

PMCID: 1866399
DOI: 10.1186/1471-2105-6-S4-S1

[…] however, is dependent upon the number of binding peptides used in the training set., caenorhabditis elegans and c. briggsae share conserved but rapidly evolving genomes. rambaldi et al. [] developed nemafootprinter (nematode transcription factor scan through phylogenetic footprinting), a web-based software for interactive identification of conserved, non-exonic dna segments in their genomes. […]


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NemaFootPrinter institution(s)
IFOM-FIRC Institute of Molecular Oncology Foundation, Milan, Italy
NemaFootPrinter funding source(s)
Supported by an AIRC (Italian Association for Cancer Research) fellowship in the framework of the AIRC Bioinformatic Center Grant (BICG) and by FIRC (Italian Foundation for Cancer Research).

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