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neo4j specifications

Information


Unique identifier OMICS_16853
Name neo4j
Software type Package/Module
Interface Graphical user interface
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 3.1.2
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Neo4j

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  • person_outline Neo4j Team <>

neo4j in publications

 (29)
PMCID: 5933701
PMID: 29723213
DOI: 10.1371/journal.pone.0195271

[…] api (http://nif-services.neuinfo.org/ontoquest/reconcile) provided by the neuroscience information framework [] to retrieve suggested auto-completions for users’ input., researchmaps uses the neo4j 2.2.1 graph database and its query language, cypher (neo technology, inc., san mateo, ca, usa). graph databases store data in nodes and edges (as opposed to the tuples used in relational […]

PMCID: 5948496
PMID: 29587366
DOI: 10.3390/s18040965

[…] an intel core i5 2.67 ghz machine with 4 gb of memory running linux mint 14. our algorithms and graph building were implemented in java using jdk version 1.6. we used the current stable release of neo4j [], which is a community edition of neo4j stable release 1.9., the performance evaluation study is based on a real zip code boundary dataset [], which consist of 33,174 zip codes […]

PMCID: 5834486
PMID: 29535761
DOI: 10.3389/fgene.2018.00060

[…] different sources of information from actively maintained meta-databases and allows the visualization of possible paths between various diseases, genes and compounds (himmelstein et al., , https://neo4j.het.io/). for example, to explore possible links between a given disease, compounds and gene nodes, hetionet uses the following databases: disease ontology (kibbe et al., ), drug bank (law et […]

PMCID: 5812617
PMID: 29444127
DOI: 10.1371/journal.pone.0191917

[…] we use the yifan hu algorithm., in this subsection, we show our experiments considering querying ds1, ds2, ds3, ds4 and ds5 before and after us reducing vertices in common graph databases, such as neo4j [], titan 1.0.0 [], and orientdb 2.2.14 []. all these property graph databases were running in docker [], which is a completely sandboxed virtual environment. the instructions to build images […]

PMCID: 5731498
PMID: 29244012
DOI: 10.1186/s12859-017-1921-4

[…] format., graph database allows one to natively store protein graphs and search for induced subgraphs defined by the query structural elements. we tried to adopt this approach in [] where we used neo4j graph database. unfortunately, we found that this method is viable for structural elements only up to about 12 edges, but in our knowledge base approximately 45% of d 1 structural elements […]


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