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Information


Unique identifier OMICS_16853
Name neo4j
Software type Package/Module
Interface Graphical user interface
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 3.1.2
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Neo4j

Versioning


No version available

Maintainer


  • person_outline Neo4j Team

neo4j citations

 (49)
library_books

ResearchMaps.org for integrating and planning research

2018
PLoS One
PMCID: 5933701
PMID: 29723213
DOI: 10.1371/journal.pone.0195271

[…] NeuroLex API (http://nif-services.neuinfo.org/ontoquest/reconcile) provided by the Neuroscience Information Framework [] to retrieve suggested auto-completions for users’ input.ResearchMaps uses the Neo4j 2.2.1 graph database and its query language, Cypher (Neo Technology, Inc., San Mateo, CA, USA). Graph databases store data in nodes and edges (as opposed to the tuples used in relational databas […]

library_books

Efficient Proximity Computation Techniques Using ZIP Code Data for Smart Cities †

2018
PMCID: 5948496
PMID: 29587366
DOI: 10.3390/s18040965

[…] on an Intel Core I5 2.67 GHz machine with 4 GB of memory running Linux Mint 14. Our algorithms and graph building were implemented in JAVA using JDK version 1.6. We used the current stable release of Neo4j [], which is a community edition of Neo4j Stable Release 1.9. […]

library_books

A Genome Wide Search for Gene Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG

2018
Front Genet
PMCID: 5834486
PMID: 29535761
DOI: 10.3389/fgene.2018.00060

[…] es different sources of information from actively maintained meta-databases and allows the visualization of possible paths between various diseases, genes and compounds (Himmelstein et al., , https://neo4j.het.io/). For example, to explore possible links between a given disease, compounds and gene nodes, Hetionet uses the following databases: Disease Ontology (Kibbe et al., ), Drug Bank (Law et al […]

library_books

Metaviz: interactive statistical and visual analysis of metagenomic data

2018
Nucleic Acids Res
PMCID: 5887897
PMID: 29529268
DOI: 10.1093/nar/gky136

[…] lational database uses MySQL [https://www.mysql.com/] as the database management system and PHP [http://php.net/] to handle requests from the web browser client. The graph database configuration uses Neo4j [https://neo4j.com/] and the Flask web development framework [http://flask.pocoo.org/]. In the benchmarks, we deploy our back end services on an Amazon EC2 t2.small instance and used the wrk too […]

library_books

Key Inflammatory Processes in Human NASH Are Reflected in Ldlr−/−.Leiden Mice: A Translational Gene Profiling Study

2018
Front Physiol
PMCID: 5829089
PMID: 29527177
DOI: 10.3389/fphys.2018.00132

[…] ng Venny 2.1 (Oliveros, ) and heatmaps were generated using a web-based tool (Babicki et al., ). The genes that belong to significantly regulated inflammatory canonical pathways were visualized using Neo4J (Neo4j, Inc, San Mateo, CA, USA) a graph database with query-based calculations. […]

library_books

Interleukins and their signaling pathways in the Reactome biological pathway database

2018
PMCID: 5927619
PMID: 29378288
DOI: 10.1016/j.jaci.2017.12.992

[…] embodied in Reactome’s representation of pathways makes its content consistent and computationally accessible. This content is available programmatically through a REST-based content service and as a Neo4J graph database. Reactome provides visualization widgets that can be embedded into Web pages, making Reactome content easily reusable in third-party Web sites, benefiting the systems biology and […]

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