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Neoplasms

Neoplasm is an abnormal mass of tissue that results when cells divide more than they should or do not die when they should. Neoplasms may be benign (not cancer), or malignant (cancer). Also called tumor.
ICD-10 - Chapter II: Neoplasms

NCG
Dataset

NCG Network of Cancer Genes

A manually curated repository of cancer genes derived from the scientific…

A manually curated repository of cancer genes derived from the scientific literature. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational…

Pathology Atlas
Dataset

Pathology Atlas

Gathers information about the protein-coding genes of seventeen major cancer…

Gathers information about the protein-coding genes of seventeen major cancer types and their genome-wide transcriptome. Pathology Atlas is an open-access database, part of the Human Protein Atlas,…

TCGA Data Portal
Dataset

TCGA Data Portal The Cancer Genome Atlas Data Portal

Generates, analyzes, and makes available genomic sequence, expression,…

Generates, analyzes, and makes available genomic sequence, expression, methylation, and copy number variation (CNV) data on over 11,000 individuals who represent over 30 different types of cancer.…

GCGene
Dataset

GCGene Gastric Cancer Gene database

A literature-based database with comprehensive annotations supported by a…

A literature-based database with comprehensive annotations supported by a user-friendly website. In the current release, we have collected 1,815 unique human genes including 1,678 protein-coding and…

CancerPPD
Dataset

CancerPPD

A repository of experimentally verified anticancer peptides (ACPs) and…

A repository of experimentally verified anticancer peptides (ACPs) and anticancer proteins. Data were manually collected from published research articles, patents and from other databases. A…

SNooPer
Desktop

SNooPer

A versatile machine learning approach that uses Random Forest classification…

A versatile machine learning approach that uses Random Forest classification models to accurately call somatic variants in low-depth sequencing data. SNooPer uses a subset of variant positions from…

CoReCG
Dataset

CoReCG Colon Rectal Cancer Gene Database

Contains 2056 colon-rectal cancer genes information involved in distinct…

Contains 2056 colon-rectal cancer genes information involved in distinct colorectal cancer stages sourced from published literature with an effective knowledge based information retrieval system.…

MSGene
Dataset

MSGene Metastasis Suppressor Gene Database

The first literature-based gene resource for exploring human metastasis…

The first literature-based gene resource for exploring human metastasis suppressor genes (MS genes) to unveil the cellular complexity of MS genes. MSGene database stores 194 human MS genes (161…

ChimerDB
Dataset

ChimerDB

Offers fusion genes encompassing analysis of deep sequencing data and manual…

Offers fusion genes encompassing analysis of deep sequencing data and manual curations. ChimerDB is composed of three modules: ChimerKB, ChimerPub and ChimerSeq. ChimerKB represents a knowledgebase…

MTB
Dataset

MTB Mouse Tumor Biology

A unique online compendium of mouse models for human cancer. MTB provides…

A unique online compendium of mouse models for human cancer. MTB provides online access to expertly curated information on diverse mouse models for human cancer and interfaces for searching and…

CanSAR
Dataset

CanSAR

A publicly available, multidisciplinary, cancer-focused knowledgebase developed…

A publicly available, multidisciplinary, cancer-focused knowledgebase developed to support cancer translational research and drug discovery. canSAR integrates genomic, protein, pharmacological, drug…

DoCM
Dataset

DoCM Database of Curated Mutations in Cancer

Enables to aggregate, store, and track biologically important cancer variants…

Enables to aggregate, store, and track biologically important cancer variants for the cancer research community. DoCM is an open resource that provides an easy access to a current and accurate list…

STROMA4
Desktop

STROMA4

Allows to estimate generative properties for the Lehmann subtypes, an…

Allows to estimate generative properties for the Lehmann subtypes, an alternative Triple-Negative Breast Cancer (TNBC) subtyping scheme. STROMA4 can measure four stromal properties identified in TNBC…

BCaPE
Dataset

BCaPE Breast Cancer PDTX Encyclopaedia

A biobank of breast cancer explants with preserved intra-tumor heterogeneity to…

A biobank of breast cancer explants with preserved intra-tumor heterogeneity to screen anticancer compounds. BCaPE provides tools for visualizing, querying and downloading data from a large…

DTP
Dataset

DTP Anti-cancer Agent Mechanism Database

Provides services and resources to the academic and private-sector research…

Provides services and resources to the academic and private-sector research communities worldwide to facilitate the discovery and development of new cancer therapeutic agents. Services available…

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SomamiR
Dataset

SomamiR

A database of cancer somatic mutations in microRNAs (miRNA) and their target…

A database of cancer somatic mutations in microRNAs (miRNA) and their target sites that potentially alter the interactions between miRNAs and competing endogenous RNAs (ceRNA) including mRNAs,…

ICGC
Dataset

ICGC International Cancer Genome Consortium

A comprehensive description of genomic, transcriptomic and epigenomic changes…

A comprehensive description of genomic, transcriptomic and epigenomic changes in 50 different tumor types and/or subtypes which are of clinical and societal importance across the globe. The ICGC…

DriverDB
Dataset

DriverDB

Incorporates approximately 6000 cases of exome-seq data, in addition to…

Incorporates approximately 6000 cases of exome-seq data, in addition to annotation databases and published bioinformatics algorithms dedicated to driver gene/mutation identification. The database…

Cancer Gene…
Dataset

Cancer Gene Census

An ongoing effort to catalogue those genes for which mutations have been…

An ongoing effort to catalogue those genes for which mutations have been causally implicated in cancer.

ARDB
Dataset

ARDB The Androgen Receptor Gene Mutations Database World Wide Web Server

Provides data about mutations of the androgen receptor gene (AR). ARDB contains…

Provides data about mutations of the androgen receptor gene (AR). ARDB contains over 800 entries of mutations causing androgen insensitivity syndrome (AIS), representing over 500 different AR…

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dbDEMC
Dataset

dbDEMC database of Differentially Expressed MiRNAs in human Cancers

Provides a collection of differentially expressed miRNAs in human cancers…

Provides a collection of differentially expressed miRNAs in human cancers obtained from microarray data. dbDEMC documents 209 expression profiling data sets across 36 cancer types and 73 subtypes,…

CTRP
Dataset

CTRP Cancer Therapeutics Response Portal

Links genetic, lineage, and other cellular features of cancer cell lines to…

Links genetic, lineage, and other cellular features of cancer cell lines to small-molecule sensitivity with the goal of accelerating discovery of patient-matched cancer therapeutics. CTRP hosts an…

arrayMap
Dataset

arrayMap

A curated reference database and bioinformatics resource targeting copy number…

A curated reference database and bioinformatics resource targeting copy number profiling data in human cancer. The arrayMap database provides a platform for meta-analysis and systems level data…

IntOGen
Dataset

IntOGen

A resource for the cancer research community that facilitates interrogation of…

A resource for the cancer research community that facilitates interrogation of a substantial amount of data from genome-wide analyses. The current version contains data from almost 800 independent…

Colorectal…
Dataset

Colorectal cancer atlas

An integrated web-based resource that catalogues the genomic and proteomic…

An integrated web-based resource that catalogues the genomic and proteomic annotations identified in colorectal cancer (CRC) tissues and cell lines. The data catalogued to-date include sequence…

VALORATE
Desktop

VALORATE

Estimates the null distribution and the p-value of the log-rank based on a…

Estimates the null distribution and the p-value of the log-rank based on a recent reformulation. VALORATE was developed and tested for cancer genomics that is heavily affected by unbalanced survival…

CTdatabase
Dataset

CTdatabase

This database is aimed at stimulating and providing a reference for further…

This database is aimed at stimulating and providing a reference for further research on Cancer-Testis (CT) antigens.

LGEA
Dataset

LGEA Lung Gene Expression Analysis

Provides useful graphical interfaces with new interactive options to uses…

Provides useful graphical interfaces with new interactive options to uses increasingly comprehensive RNA expression data sets. LGEA offers an extended database enabling rapid analysis of (i)…

PubMeth
Dataset

PubMeth

A cancer methylation database that includes genes that are reported to be…

A cancer methylation database that includes genes that are reported to be methylated in various cancer types. A query can be based either on genes (to check in which cancer types the genes are…

HCCNet
Dataset

HCCNet

A network with thousands of HCC-related genes identified in different types and…

A network with thousands of HCC-related genes identified in different types and stages of hepatocellular carcinoma samples.

MethyCancer
Dataset

MethyCancer

It is developed to study interplay of DNA methylation, gene expression and…

It is developed to study interplay of DNA methylation, gene expression and cancer. It hosts both highly integrated data of DNA methylation, cancer-related gene, mutation and cancer information from…

CancerResource
Dataset

CancerResource

A comprehensive knowledgebase for drug-target relationships related to cancer…

A comprehensive knowledgebase for drug-target relationships related to cancer as well as for supporting information or experimental data. CancerResource contains about 91 000 drug-target relations,…

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BloodSpot
Dataset

BloodSpot

Provides an expression plot of genes in healthy and cancerous haematopoietic…

Provides an expression plot of genes in healthy and cancerous haematopoietic cells at specific differentiation stages. BloodSpot facilitates the easy assessment of gene-expression data and how this…

CGWB
Dataset

CGWB Cancer Genome WorkBench

Computational platform to integrate clinical tumor mutation profiles with the…

Computational platform to integrate clinical tumor mutation profiles with the reference human genome.

PBCMC
Desktop

PBCMC Permutation-Based Confidence for Molecular Classification

Characterizes uncertainty assessment on gene expression classifiers, a. k. a.…

Characterizes uncertainty assessment on gene expression classifiers, a. k. a. molecular signatures, based on a permutation test. PBCMC estimates assignment uncertainty using the only available data,…

OncoPaD
Web
Desktop

OncoPaD

A tool aimed at the rational design of cancer gene panels. OncoPaD estimates…

A tool aimed at the rational design of cancer gene panels. OncoPaD estimates the cost-effectiveness of the designed panel on a cohort of tumors and provides reports on the importance of individual…

PED
Dataset

PED Pancreatic Expression database

Designed to address various cancer research problems, ranging from the specimen…

Designed to address various cancer research problems, ranging from the specimen origin and type, through cancer development stage to expression patterns.

PCM-SABRE
Desktop
COLT-Cancer
Dataset

COLT-Cancer

Gathers information about shRNA. COLT-Cancer is a web-accessible database…

Gathers information about shRNA. COLT-Cancer is a web-accessible database system that assists users to explore shRNA activities. This platform contains several functions allowing to browse, query and…

CCDB
Dataset

CCDB Cervical Cancer Gene Database

A manually curated catalog of experimentally validated genes that are thought…

A manually curated catalog of experimentally validated genes that are thought to be involved in the different stages of cervical carcinogenesis.

SelTarbase
Dataset

SelTarbase

Facilitates the assigning of statistically deviant mutation frequencies based…

Facilitates the assigning of statistically deviant mutation frequencies based on our previously published model. SelTarbase is a comprehensive curated mutation data collection of human microsatellite…

MoKCa
Dataset

MoKCa Mutations of Kinases in Cancer

Developed to structurally and functionally annotate, and where possible…

Developed to structurally and functionally annotate, and where possible predict, the phenotypic consequences of mutations in protein kinases implicated in cancer.

OncoDB.HCC
Dataset

OncoDB.HCC

Based on physical maps of rodent and human genomes containing quantitative…

Based on physical maps of rodent and human genomes containing quantitative trait loci of rodent HCC models and various human HCC somatic aberrations.

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miRCancer
Dataset

miRCancer

Provides comprehensive collection of microRNA (miRNA) expression profiles in…

Provides comprehensive collection of microRNA (miRNA) expression profiles in various human cancers which are automatically extracted from published literatures in PubMed. It utilizes text mining…

CanProVar
Dataset

CanProVar

Stores and characterizes cancer-related alterations of single amino acid in the…

Stores and characterizes cancer-related alterations of single amino acid in the human proteome as well as variations detected in normal samples. CanProVar 2.0 allows users to retrieve protein-level…

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CAsubtype
Desktop

CAsubtype

Identifies gene sets for cancer subtype identification and clinical outcome…

Identifies gene sets for cancer subtype identification and clinical outcome prediction. CAsubtype integrates more than 13,000 annotated gene sets and provides a comprehensive repertoire of candidates…

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OncomiRDB
Dataset

OncomiRDB oncomiRNA DataBase

Aims at annotating the experimentally verified oncogenic and tumor-suppressive…

Aims at annotating the experimentally verified oncogenic and tumor-suppressive miRNAs from literature. OncomiRDB only collects items having direct functional evidences: 1) the miRNA regulates at…

Chaste
Desktop

Chaste Cancer Heart And Soft Tissue Environment

An open-source library for computational biology that has well-developed…

An open-source library for computational biology that has well-developed cardiac electrophysiology tissue simulation support. Chaste is a general purpose simulation package aimed at multi-scale,…

SCDE
Dataset

SCDE Stem Cell Discovery Engine

An online database of curated cancer stem cell experiments coupled to the…

An online database of curated cancer stem cell experiments coupled to the Galaxy analytical framework.

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CRN
Dataset

CRN Cancer RNA-Seq Nexus

Provides all of the following features: (i) large-scale and comprehensive data…

Provides all of the following features: (i) large-scale and comprehensive data archives and analyses, including coding-transcript profiling, long non-coding RNA (lncRNA) profiling and coexpression…

BIC
Dataset

BIC Breast cancer Information Core

An open access, on-line mutation database for breast cancer susceptibility…

An open access, on-line mutation database for breast cancer susceptibility genes.

M3db
Dataset

M3db

Helps user to extract the information on the pathway meta-analysis of…

Helps user to extract the information on the pathway meta-analysis of metastatic melanoma for the two stages, Cutaneous Metastasis and Lymph Node. M3db contains 642 microarray samples meta-analysed…

DREMECELS
Dataset

DREMECELS DNA REpair MEchanism in Colorectal Endometrium and Lynch Syndrome

A curated database for base excision and mismatch repair mechanisms associated…

A curated database for base excision and mismatch repair mechanisms associated human malignancies. DREMECELS contains 156 genes and two repair mechanisms, base excision repair (BER) and mismatch…

mTCTScan
Web

mTCTScan Mutation To Cancer Therapy Scan

Analyzes mutation-cancer drug associations based on given cancer genomic…

Analyzes mutation-cancer drug associations based on given cancer genomic profiles. mTCTScan can prioritize mutations by incorporating all their associations with cancer drugs and preclinical…

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QPATH
Desktop

QPATH Quantitative methods for pathology

Predicts the molecular subtypes of colorectal cancer from the routine histology…

Predicts the molecular subtypes of colorectal cancer from the routine histology images. QPATH uses neural networks for extracting local descriptors which were then used for constructing a…

GDC
Dataset

GDC Genomic Data Commons

Supports the import and standardization of genomic and clinical data from…

Supports the import and standardization of genomic and clinical data from cancer research programs. GDC contains NCI-generated data from some of the largest and most comprehensive cancer genomic…

CGI
Web

CGI Cancer Genome Interpreter

Supports the identification of therapeutically actionable genomic alterations…

Supports the identification of therapeutically actionable genomic alterations in tumors. CGI (i) identifies validated oncogenic alterations in a tumor, (ii) predicts the effect of the remaining…

GBGFA
Desktop

GBGFA Gene-wise Prior Bayesian Group Factor Analysis

Leverages similarities in response profiles of groups of drugs that are more…

Leverages similarities in response profiles of groups of drugs that are more likely to be related to true biological signal, which leads to more robust performance and improved generalization…

TRONCO
Desktop

TRONCO TRanslational ONCOlogy

Infers cancer progression models from heterogeneous genomic data. TRONCO is an…

Infers cancer progression models from heterogeneous genomic data. TRONCO is an R package built to extract population-level models describing the trends of accumulation of alterations in a cohort of…

PANDA
Desktop

PANDA Passing Attributes between Networks for Data Assimilation

Models information flow in regulatory networks using an integrative approach.…

Models information flow in regulatory networks using an integrative approach. PANDA is a message-passing model which searches for agreement among various data-types using information from each to…

ESTIMATE
Desktop
SurvMicro
Dataset

SurvMicro

A free and easy-to-use web tool that assesses miRNA signatures from publicly…

A free and easy-to-use web tool that assesses miRNA signatures from publicly available miRNA profiles using multivariate survival analysis.

HPtaa database
Dataset

HPtaa database Human Potential tumor associated antigen database

A publicly available Human Potential Tumor Associated Antigen database (HPtaa)…

A publicly available Human Potential Tumor Associated Antigen database (HPtaa) with pTAAs identified by insilico computing.

CCG
Dataset

CCG Catalogue of Cancer Genes

An integrated interactome of cancer genes. CCG has broad biomedical…

An integrated interactome of cancer genes. CCG has broad biomedical implications for both basic cancer biology and the development of personalized cancer therapy.

FEB3
Desktop

FEB3 Finite Element Bioengineering in 3d

Encompasses solid tumour growth and tumour induced angiogenesis. FEB3 is a…

Encompasses solid tumour growth and tumour induced angiogenesis. FEB3 is a validated three-dimensional mathematical and computational multiscale framework. The proposed in-silico model of dynamically…

icTAIR
Desktop

icTAIR iterative Contextual Transcriptional Activity Inference of Regulators

Contextually-refines regulator target gene lists. icTAIR takes a regulator’s…

Contextually-refines regulator target gene lists. icTAIR takes a regulator’s previously-identified target gene list and combines it with gene expression data from a context, quantifying that…

pathTiMEx
Desktop

pathTiMEx

A generative probabilistic graphical model that describes tumor progression as…

A generative probabilistic graphical model that describes tumor progression as a partially ordered set of mutually exclusive driver pathways. PathTiMEx employs a stochastic optimization procedure to…

The Cancer…
Dataset

The Cancer Genome Atlas Clinical Explorer

Enhances the clinical utility of The Cancer Genome Atlas (TCGA) data for…

Enhances the clinical utility of The Cancer Genome Atlas (TCGA) data for biomedical scientist and clinicians. The Cancer Genome Atlas Clinical Explorer facilitates the clinical use of TCGA data by…

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IGDB.NSCLC
Dataset

IGDB.NSCLC Integrated Genomic Database of Non-Small Cell Lung Carcinoma

Aims to facilitate and prioritize identified lung cancer genes and microRNAs…

Aims to facilitate and prioritize identified lung cancer genes and microRNAs for pathological and mechanistic studies of lung tumorigenesis and for developing new strategies for clinical…

MelGene
Dataset

MelGene

Provides a comprehensive, regularly updated, collection of data from genetic…

Provides a comprehensive, regularly updated, collection of data from genetic association studies in cutaneous melanoma (CM), including random-effects meta-analysis results of all eligible…

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S-MED
Dataset

S-MED Sarcoma MicroRNA Expression Database

A repository that describes the patterns of miRNA expression in various human…

A repository that describes the patterns of miRNA expression in various human sarcoma types. S-MED provides both Basic and Advanced data search options for exploration of the data in heatmap and text…

CL
Web

CL Cancer Landscapes

Provides data-derived statistical network models for 8 human cancers. CL…

Provides data-derived statistical network models for 8 human cancers. CL contains several functions for biological interpretability of the network models, such as pathway analysis, drug-target…

MethHC
Dataset

MethHC

A database comprising a systematic integration of a large collection of DNA…

A database comprising a systematic integration of a large collection of DNA methylation data and mRNA/microRNA expression profiles in human cancer. MethHC integrates data such as DNA methylation,…

PubAngioGen
Dataset

PubAngioGen

Displays a comprehensive network for exploring the connection between…

Displays a comprehensive network for exploring the connection between angiogenesis and diseases at multilevels including protein-protein interaction, drug-target, disease-gene and signaling pathways…

Cancer3D
Dataset

Cancer3D

Gives an open and user-friendly way to analyze cancer missense mutations in the…

Gives an open and user-friendly way to analyze cancer missense mutations in the context of structures of proteins in which they are found. Cancer3D also helps users analyze the distribution patterns…

Epidaurus
Desktop
Web

Epidaurus

Integrative analyses of epigenetic data promise a deeper understanding of the…

Integrative analyses of epigenetic data promise a deeper understanding of the epigenome. Epidaurus is a bioinformatics tool used to effectively reveal inter-dataset relevance and differences through…

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starBase
Dataset

starBase

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs,…

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from large-scale CLIP-Seq (HITS-CLIP,…

BCCTBbp
Dataset

BCCTBbp Breast Cancer Campaign Tissue Bank bioinformatics portal

It is dedicated to maximising research on patient tissues by initially storing…

It is dedicated to maximising research on patient tissues by initially storing genomics, methylomics, transcriptomics, proteomics and microRNA data that has been mined from the literature and linking…

CCGD
Dataset

CCGD Candidate Cancer Gene Database

A manually curated database containing a unified description of all identified…

A manually curated database containing a unified description of all identified candidate driver genes and the genomic location of transposon common insertion sites (CISs) from all currently published…

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TMREC
Dataset

TMREC Transcription factor and MiRNA Regulatory Cascades in Human Diseases

A database which provides a user-friendly interface for convenient retrieval…

A database which provides a user-friendly interface for convenient retrieval and visualization of TF-miRNA regulatory cascades and clusters in specific disease by TF, miRNA or disease name. TMREC…

CellLineNavigat…
Dataset

CellLineNavigator

A web-based workbench for large scale comparisons of a large collection of…

A web-based workbench for large scale comparisons of a large collection of diverse cell lines.

PCAWG
Dataset

PCAWG PanCancer Analysis of Whole Genomes

Gathers information about available whole-genome sequencing (WGS) data from The…

Gathers information about available whole-genome sequencing (WGS) data from The International Cancer Genome Consortium’s (ICGC). PCAWG contains a set of matched whole genome and transcriptome…

CancerGD
Dataset

CancerGD Cancer Genetic Dependencies Database

Integrates genotypic profiling with largescale loss-of-function genetic screens…

Integrates genotypic profiling with largescale loss-of-function genetic screens in tumor cell lines to identify such genetic dependencies. CancerGD provides tools for searching, visualizing, and…

BcCluster
Dataset

BcCluster Bladder Cancer Cluster

An open-source database dedicated to the comprehensive molecular…

An open-source database dedicated to the comprehensive molecular characterization of muscle invasive bladder carcinoma (BC). BcCluster contains all reported molecular features significant in invasive…

RAAR
Dataset

RAAR Regulators of Androgen Action Resource

A web-based user-friendly searchable database to study androgen action in…

A web-based user-friendly searchable database to study androgen action in prostate cancer more efficiently. RAAR centralizes information on gene function, clinical relevance, and resources for the…

PathScore
Web

PathScore

A web tool for identifying altered pathways in cancer data. PathScore…

A web tool for identifying altered pathways in cancer data. PathScore quantifies the level of enrichment of somatic mutations within curated pathways, applying a novel approach that identifies…

ChromothripsisD…
Dataset

ChromothripsisDB

A manually curated database containing a unified description of all published…

A manually curated database containing a unified description of all published chromothripsis cases and relevant genomic aberrations. Currently, 423 chromothripsis samples representing 107 research…

MYCbase
Dataset

MYCbase

Contains information about the MYC, a gene that has several functions: in cell…

Contains information about the MYC, a gene that has several functions: in cell growth, differentiation, apoptosis, or genomic stability. MYCbase is a tertiary database compiling various aspects of…

G2SBC
Dataset

G2SBC Genes-to-Systems Breast Cancer

A bioinformatics resource that collects and integrates data about genes,…

A bioinformatics resource that collects and integrates data about genes, transcripts and proteins which have been reported in literature to be altered in breast cancer cells.

iACP
Web

iACP Anticancer Peptides

A web-server for identifying whether a peptide belongs to anticancer or…

A web-server for identifying whether a peptide belongs to anticancer or non-anticancer purely based on its sequence information alone. iACP uses the wrapper-type feature selection technique to seek…

CMS
Dataset

CMS Cancer Methylome System

A web-based database application designed for the visualization, comparison and…

A web-based database application designed for the visualization, comparison and statistical analysis of human cancer-specific DNA methylation. CMS provides visualization and analytic functions for…

RCGDB
Dataset

RCGDB Roche Cancer Genome DataBase

A freely available biological information system integrating different kinds of…

A freely available biological information system integrating different kinds of mutation data.

GeMDBJ Proteomics
Dataset
LymPHOS
Dataset

LymPHOS

An open access database for storage, sharing and visualization of data related…

An open access database for storage, sharing and visualization of data related with the human T-lymphocyte phosphoproteome. LymPHOS aims to provide a complete set of experimental data including…

ProKinO
Dataset

ProKinO

An ontological framework for integrating and conceptualizing diverse forms of…

An ontological framework for integrating and conceptualizing diverse forms of information related to kinase activation and regulatory mechanisms in a machine readable, human understandable form. You…

NCDB
Dataset

NCDB National Cancer DataBase

Contains clinical oncology information collected from hospital registry data.…

Contains clinical oncology information collected from hospital registry data. NCDB can be used to analyze and track patients with malignant neoplastic diseases, their treatments, and outcomes. It…

F-Census
Dataset

F-Census

A database designed for browsing, evaluating and selecting functionally…

A database designed for browsing, evaluating and selecting functionally consistent cancer gene from various data sources.

dbCPCO
Dataset

dbCPCO

Provides a database of findings of genetic studies related to colorectal cancer…

Provides a database of findings of genetic studies related to colorectal cancer prognosis and clinical outcome. dbCPCO is a manually curated database that compiles and presents the relevant…

BloodChIP
Dataset

BloodChIP

A user friendly database that integrates genome-wide binding profiles of…

A user friendly database that integrates genome-wide binding profiles of haematopoietic transcription factors in human blood cell types with chromatin accessibility profiles from the Human Epigenome…

miRDR
Dataset

miRDR microRNA Dynamic Regulation Database

Provides data about dynamic miRNA-gene interactions, particularly focusing on…

Provides data about dynamic miRNA-gene interactions, particularly focusing on the conditional interactions that are associated with tumor progression in multiple human cancers. miRDR concerns cancers…

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HCMDB
Dataset

HCMDB human cancer metastasis database

Provides published cancer metastasis expression profiles. HCMDB is a human…

Provides published cancer metastasis expression profiles. HCMDB is a human cancer database that permits the analysis and visualization of mRNA/lncRNA co-expression networks and miRNA regulatory…

Abstract Plus
Desktop

Abstract Plus

Gathers data on medical records. Abstract Plus was used for the establishment…

Gathers data on medical records. Abstract Plus was used for the establishment of the National Cancer Database. It assists users in better comprehension of medical contents.

DCC
Dataset

DCC Deleted in Colorectal Carcinoma

Provides a database of deleted in colorectal cancer gene. DCC provides an…

Provides a database of deleted in colorectal cancer gene. DCC provides an update on the observed genotype-phenotype relationships of congenital mirror movements, isolated agenesis of the corpus…

SEECancer
Dataset

SEECancer Somatic Events in Evolution of Cancer genome

Provides a comprehensive resource of cancer evolutionary stage-specific events…

Provides a comprehensive resource of cancer evolutionary stage-specific events and their temporal orders. SEECancer is an online database containing over 1200 cancer evolutionary stage-specific…

SBCDDB
Dataset

SBCDDB Sleeping Beauty Cancer Driver DataBase

Couples statistical tests with spatial information to provide context behind…

Couples statistical tests with spatial information to provide context behind decisions identifying cancer driver genes. SBCDDB is a database that contains 19 primary mouse models of human tumor types…

MatchMiner
Desktop

MatchMiner

Allows computerized matching of patient-specific genomic profiles to precision…

Allows computerized matching of patient-specific genomic profiles to precision clinical trials in cancer medicine. MatchMiner automatically matches the patient-specific genomic events to clinical…

BCNTB bioinformatics
Web

BCNTB bioinformatics Breast Cancer Now Tissue Bank bioinformatics

Mines literature data and access basic transcriptomic analyses about breast…

Mines literature data and access basic transcriptomic analyses about breast cancer data. BCNTB is composed of two main functions: BCNTB:Analytics, that investigates datasets and conducts a text…

OASISPRO
Web
Desktop

OASISPRO Omics Analysis System for Precision Oncology

Allows oncological clinical prediction. OASISPRO is a cloud-based omics…

Allows oncological clinical prediction. OASISPRO is a cloud-based omics analysis tool that integrates quantitative omics data and builds prediction models for cancer phenotypes. The software enables…

Skin Reference…
Dataset

Skin Reference Genes

Provides a set of candidate genes that exhibit very low variability across a…

Provides a set of candidate genes that exhibit very low variability across a range of NMSC lesions comprising intraepidermal carcinoma (IEC), squamous cell carcinoma (SCC) and precancerous…

COD
Dataset

COD Cancer Odor Database

Provides detailed and validated information about volatile organic metabolites…

Provides detailed and validated information about volatile organic metabolites of cancer (VOMCs). COD is a database that enables researchers to do comparison among the changes of VOMCs in different…

Oncopression
Web

Oncopression

Provides graphical comparison results between normal and cancer with student…

Provides graphical comparison results between normal and cancer with student t-test statistics. Oncopression is focused on microarray-based gene expression profiles for normal and cancer. This web…

HPCDb
Dataset

HPCDb Database for Human Pancreatic Cancer

Extracts, analyzes, and integrates Pancreatic Cancer (PC)-related genes,…

Extracts, analyzes, and integrates Pancreatic Cancer (PC)-related genes, single-nucleotide polymorphisms (SNPs), and microRNAs (miRNAs). HPCDb contains data were extracted from published literature…

CSCTT
Dataset

CSCTT Cancer Stem Cells Therapeutic Target Database

Provides users with biological tools and the hyperlinks to various biological…

Provides users with biological tools and the hyperlinks to various biological databases, including UniProt, Protein Data Bank (PDB), KEGG, and PubChem. The CSCTT is a database that consists of two…

CTD2 Data Portal
Dataset

CTD2 Data Portal Cancer Target Discovery And Development Data Portal

Compiles network-generated summaries about key cancer biology findings and…

Compiles network-generated summaries about key cancer biology findings and cancer-relevant results related to proteins, genes and compounds. The Cancer Target Discovery and Development Data Portal is…

CMIF
Desktop

CMIF Causal Model Inference Framework

Formalizes causal relationships between somatic genomic events, signaling…

Formalizes causal relationships between somatic genomic events, signaling pathway activity and immune activity in the tumor. CMIF infers directed interactions between signaling pathway activity and…

ONGene
Dataset

ONGene

Shares the curated genes, literature and biological annotations. ONGene is a…

Shares the curated genes, literature and biological annotations. ONGene is a database that offers a reference list for the large-scale genetic screen and a classified oncogenes (ONG) catalog for…

Cancer…
Web

Cancer PanorOmics

Integrates and displays high-throughput cancer sequencing analyses, together…

Integrates and displays high-throughput cancer sequencing analyses, together with data obtained from individual patients. Cancer PanorOmics is a web app that maps mutations on the high-resolution 3D…

BCIP
Dataset

BCIP Breast Cancer Integrative Platform

Maintains multi-omics data selected with strict quality control and processed…

Maintains multi-omics data selected with strict quality control and processed with uniform normalization methods. BCIP is a database that provides a user-friendly interface integrating comprehensive…

PCGR
Desktop

PCGR Personal Cancer Genome Reporter

Generates a tiered report that will aid the interpretation of individual cancer…

Generates a tiered report that will aid the interpretation of individual cancer genomes in a clinical setting. PCGR is a stand¬alone, open¬source software package for somatic variant annotation…

CCLP
Web

CCLP Cancer Cell Line Profiler

Implements conformal prediction to provide individual prediction errors at…

Implements conformal prediction to provide individual prediction errors at several confidence levels. CCLP is a webserver for the prediction of compound activity across the NCI60 panel. It uses a…

CAFE MOCHA
Desktop

CAFE MOCHA Clinical Association of Functionally Established MOlecular CHAnges

Provides a cancer type- and clinical attribute-agnostic computational and…

Provides a cancer type- and clinical attribute-agnostic computational and statistical framework to discover integrated molecular signature for a specific clinical attribute. CAFE MOCHA uses six…

SKY/M-FISH &…
Dataset

SKY/M-FISH & CGH Database

Provides a public platform for investigators to share and compare their…

Provides a public platform for investigators to share and compare their molecular cytogenetic data. SKY/M-FISH & CGH Database is open to everyone and all users can view an individual…

COPA
Desktop

COPA Cancer Outlier Profile Analysis

Finds genes undergoing recurrent fusion in a given cancer type by finding pairs…

Finds genes undergoing recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles. COPA is intended to find pairs of genes that may be involved in…

ChromoHub
Dataset

ChromoHub

An open access online interface where users can map chemical, structural and…

An open access online interface where users can map chemical, structural and biological data from public repositories on phylogenetic trees of protein families involved in chromatin…

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miR_Path
Desktop

miR_Path

A software for inferring cancer-related miRNAs based on gene expression data.…

A software for inferring cancer-related miRNAs based on gene expression data. It is a novel computational framework to identify the cancer-related miRNAs based solely on gene expression profiles…

QuAD
Dataset

QuAD Quantitative Assay Database

Provides a resource for the analysis of proteins implicated in tumorigenesis…

Provides a resource for the analysis of proteins implicated in tumorigenesis and cancer progression. QuAD is an online resource for investigators who want to share assays and to enable multiplexed…

EpiGeNet
Dataset

EpiGeNet

A graph database for storage and querying of conditional relationships between…

A graph database for storage and querying of conditional relationships between molecular events observed at different stages of colorectal oncogenesis. EpiGeNet integrates a Neo4j-based framework to…

PEpiD
Dataset