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Citations per year

Number of citations per year for the bioinformatics software tool Nephele

Tool usage distribution map

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Associated diseases


Popular tool citations

chevron_left Read quality control Read alignment Multiple nucleotide sequence alignment Bioinformatics workflows Sequence contamination detection Prediction-based taxonomic classification Microbial strain identification Adapter trimming Differential abundant feature detection Chimera detection Denoising chevron_right
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Nephele specifications


Unique identifier OMICS_16920
Name Nephele
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes


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Nephele citations


Real Time Rain Rate Evaluation via Satellite Downlink Signal Attenuation Measurement

PMCID: 5580102
PMID: 28805692
DOI: 10.3390/s17081864

[…] NEFOCAST (for the sake of simplicity, the more concise name NEFOCAST, originating from the contraction of “Nefele”, which is the Italian spelling for the mythological cloud nymph Nephele, and “forecast” will be used hereafter in place of the, more involved, official name of the project (SVI.I.C.T.PRECIP.) is a research project funded by the government of the Tuscany Region (It […]


Greek Manuscripts at the Wellcome Library in London: A Descriptive Catalogue

PMCID: 4407444
PMID: 25766544
DOI: 10.1017/mdh.2015.6

[…] στερον χρηματίσαντι μεγάλῳ δουκί.Illustrations (possibly scribal): (54r) diagram of the urine vial divided into eleven areas, corresponding to John Aktouarios’ On Urines [Bk. I, ch. 13]: ‘διάγραμμα / νεφέλη / ἐναιώρημα / ὑπόστασις’ – (63r) X-shaped diagram showing the four qualities and labelled: ‘ὑγρότ(ερον) / ψυχρότ(ερον) / θερμότ(ερον) / ξηρότ(ερον)’ – (146r) X-shaped diagram showing the four q […]


Applications of the MapReduce programming framework to clinical big data analysis: current landscape and future trends

BioData Min
PMCID: 4224309
PMID: 25383096
DOI: 10.1186/1756-0381-7-22

[…] re described is an effort in decomposition and parallelization of sequence alignment in prediction of a volume of genomic sequence data, which cannot be processed using sequential programming methods.Nephele is a suite of tools [] that uses the complete composition vector algorithm [] to represent each genome sequence in the dataset as a vector derived from its constituent. The method is implement […]


Australian Sphingidae – DNA Barcodes Challenge Current Species Boundaries and Distributions

PLoS One
PMCID: 4079597
PMID: 24987846
DOI: 10.1371/journal.pone.0101108

[…] and ten more cases of deep (>2%) intraspecific divergences involving Agrius convolvuli, Cephonodes picus, Daphnis placida, Gnathothlibus eras, Hippotion brennus, Macroglossum corythus, M. tenebrosa, Nephele hespera, Psilogramma menephron and Theretra nessus (, ). The two DNA barcode clusters in Agrius convolvuli show deep divergence (Dmax = 5.37%), and clear geographical segregation (). Prelimina […]


Nephele: genotyping via complete composition vectors and MapReduce

Source Code Biol Med
PMCID: 3182884
PMID: 21851626
DOI: 10.1186/1751-0473-6-13

[…] ps not dependent on any other data than what they are given. Both the neighbour-joined trees and affinity propagation algorithms depend on shared states, which breaks the MapReduce paradigm. However, Nephele provides a Message Passing Interface (MPI) version of Panjo, a neighbour-joining algorithm, that is able to handle very large trees []. Our version accepts row packed matrices instead of colum […]

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