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NeSSM | A Next-generation Sequencing Simulator for Metagenomics

Defines each position containing an explicit distribution of sequencing quality values. Sequencing coverage bias can be considered in NeSSM. It can obtain metagenomic community compositions from existing sequencing data, which can be helpful to improve the fidelity of metagenome simulation. NeSSM can be used to develop tools and to determine some critical parameters for projects based on metagenome sequencing.

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NeSSM forum

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NeSSM classification

NeSSM specifications

Unique identifier:
OMICS_01510
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

NeSSM distribution

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NeSSM support

Maintainer

  • Chaochun Wei <>

Credits

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Publications

Institution(s)

School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China; Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China

Funding source(s)

This work was supported by grants from the National Natural Science Foundation of China (61272250), the National Basic Research Program of China (2012AA101601, 2012CB316501), and the National High-Tech R&D Program (2012AA101601).

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