NetAcet protocols

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NetAcet specifications

Information


Unique identifier OMICS_03498
Name NetAcet
Interface Web user interface
Restrictions to use None
Input data Protein sequence(s)
Input format FASTA
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline NetChop Team <>

Publication for NetAcet

NetAcet in pipelines

 (3)
2015
PMCID: 4307335
PMID: 25594872
DOI: 10.3390/ijms16011806

[…] was used for glycosylation sites prediction (http://www.cbs.dtu.dk/services/netoglyc/). cbs netphos 2.0 was used for phosphorylation sites prediction (http://www.cbs.dtu.dk/services/netphos/). cbs netacet 1.0 was used for acetylation site prediction (http://www.cbs.dtu.dk/services/netacet/). phyre2 was used for protein tertiary structure prediction […]

2010
PMCID: 2963615
PMID: 21049050
DOI: 10.1371/journal.pone.0013606

[…] biological sequence analysis (cbs, kgs. lyngby, denmark): protfun (version 2.2), tmhmm (version 2.0), netnes (version 1.1), signalp (version 3.0), targetp (version 1.1), netphosyeast (version 1.0), netacet (version 1.0) and yinoyang (version 1.2)., homology modeling and structure validation: sequences of pdb structures showing similarity with the brp44 and fmp43 amino acid sequences […]

2009
PMCID: 2688184
PMID: 19284558
DOI: 10.1186/ar2644

[…] to carry the modification. these rules are included either in the findmod and findpept programs or in the various tools and software for ptms found on the expasy server [] (for instance, netphos or netacet)., in our study, a particular attention was paid to citrullination, a ptm occurring on arginine residues. several rules were applied: for one citrullinated arginine, the peptide theoretical […]


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NetAcet in publications

 (18)
PMCID: 5742180
PMID: 29312925
DOI: 10.3389/fchem.2017.00115

[…] palmitoylation sites were predicted using plantsp (http://plantsp.genomics.purdue.edu/myrist.html) and css-palm 3.0 (ren et al., ) respectively while n-terminal acylation prediction was done using netacet 1.0 (kiemer et al., ). ef-hand domains for all the sequences were predicted using smart (http://smart.embl-heidelberg.de/)., the drought-related expression of cdpk genes was examined using […]

PMCID: 5693941
PMID: 29150669
DOI: 10.1038/s41598-017-16102-0

[…] (http://web.expasy.org/protparam/). myristoylation and palmitoylation sites and n-terminal acylation were predicted using plantsp (http://plantsp.genomics.purdue.edu/myrist.html), css-palm 3.0, and netacet 1.0 software, respectively., fifty-five full-length turnip cdpk protein sequences were aligned via the mafft 7.0 program and then used to construct a phylogenic tree via the neighbor-joining […]

PMCID: 5589220
PMID: 28880890
DOI: 10.1371/journal.pone.0184356

[…] modified by removal of met1 and acetylation of ala2 [], we retained those residues in these new deletion mutants. by doing so, we ensure the acetylation of ala in the deletion mutants as assumed by netacet prediction method []. interestingly, however, fusions lacking μ2 aa 3–5 or 3–17, (1–310δ3–5)μ2-egfp and (1–310δ3–17)μ2-egfp, were negative for mt-association, as observed after transient […]

PMCID: 5509701
PMID: 28706292
DOI: 10.1038/s41598-017-05646-w

[…] myristoylaton motifs were predicted using plantsp (http://plantsp.genomics.purdue.edu/myrist.html). palmitoylation and n-terminal acylation predictions were performed using css-palm 3.0 and netacet 1.0 software, respectively. the meme program was used to search for conserved motifs in the barley candidate cdpk protein sequences. a total of 31 full-length rice and barley cdpk protein […]

PMCID: 5261026
PMID: 28032860
DOI: 10.1038/cddis.2016.422

[…] and acetylation, critically regulate the subcellular localization of intracellular proteins., we used prediction servers (http://www.cbs.dtu.dk/services/netphos and http://www.cbs.dtu.dk/services/netacet) to predict the modifications of opn and found that only phosphorylation (notably phosphoserine) may occur. the immunoprecipitation assay was then performed with anti-opn antibody followed […]


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NetAcet institution(s)
Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark, Lyngby, Denmark
NetAcet funding source(s)
The Danish National Research Foundation; the Danish Natural Science Research Council; the Danish Center for Scientific Computing; the European Union BioSapiens Network of Excellence; NeuroSearch A/S

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