NetAligner statistics

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Tool usage distribution map

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Associated diseases

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NetAligner specifications

Information


Unique identifier OMICS_07523
Name NetAligner
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publications for NetAligner

NetAligner in publications

 (3)
PMCID: 4487215
PMID: 26136815
DOI: 10.1186/s13015-015-0053-5

[…] etwork is directly connected. alignnemo [] adopts less restrict criterion and constructs edges in alignment graph if a least a pair of proteins in one ppi network is directly or indirectly connected. netaligner [] adds edges between node pair in alignment graph at a distance greater than 2 and tolerates gaps and mismatch of any length. as for dividing-and-matching-based method, manikandan et al. [ […]

PMCID: 5270500
PMID: 28194172
DOI: 10.1186/s13637-015-0022-9

[…] intuitively, it greedily grows a subgraph starting from a seed with maximum gain with respect to the cost function; a bad move (negative gain) is allowed in order to bypass a poor local optimum., netaligner [] is a pairwise aligner featuring pathway-to-interactome, complex-to-interactome, and interactome-to-interactome alignments. also, it is able to perform both inter- and intra-species […]

PMCID: 4045337
PMID: 24918034
DOI: 10.7717/peerj.413

[…] curated yeast complexes from the mpact database () to the fly interactome, finding 36 of them to be conserved in fly., for this work, we applied our recently developed tool for network comparison, netaligner, which was demonstrated to outperform the current standard in the field in a variety of different benchmarks () and was already used successfully to discover the role of structural […]


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NetAligner institution(s)
Institute for Research in Biomedicine (IRB) Barcelona, Department of Structural and Computational Biology, Joint IRB-BSC Program in Computational Biology, Barcelona, Spain

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