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NETASA specifications

Information


Unique identifier OMICS_15443
Name NETASA
Interface Web user interface
Restrictions to use None
Input data A sequence in a single letter code.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Shandar Ahmad

Publication for NETASA

NETASA citations

 (12)
library_books

In silico transcriptional regulation and functional analysis of dengue shock syndrome associated SNPs in PLCE1 and MICB genes

2016
PMCID: 4850189
PMID: 27038471
DOI: 10.1007/s10142-016-0489-9

[…] uperimposing normal and mutated proteins was found to be 1.75 Å (Fig. ).Fig. 3Fig. 4The sequence and structure relationship can be better understood with solvent accessibility prediction of residues. NetASA was used to compute the solvent accessibility of all the residues both in the native and the mutant proteins (Shandar Ahmad et al. ). It was found that in SNP rs2274223 (H1619R), the histidine […]

library_books

Analysis of the Effects of Polymorphism on Pollen Profilin Structural Functionality and the Generation of Conformational, T and B Cell Epitopes

2013
PLoS One
PMCID: 3798325
PMID: 24146818
DOI: 10.1371/journal.pone.0076066

[…] s compared to absolute surface area (ASA) of each residue calculated by DSSP program (swift.cmbi.ru.nl/gv/dssp). These values were transformed to relative values of ASA and visualized by ASAView (www.netasa.org/asaview). […]

library_books

Partner Aware Prediction of Interacting Residues in Protein Protein Complexes from Sequence Data

2011
PLoS One
PMCID: 3237601
PMID: 22194998
DOI: 10.1371/journal.pone.0029104

[…] A two-stage prediction model that was trained on interacting residue pairs, as described above, has been developed and is publicly available at http://tardis.nibio.go.jp/netasa/ppipp/. This online version of our model uses two FASTA formatted sequences as inputs and performs pair-wise predictions between their residues. Final scores are provided for residue pairs, and […]

library_books

Characterization of Intrinsically Disordered Prostate Associated Gene (PAGE5) at Single Residue Resolution by NMR Spectroscopy

2011
PLoS One
PMCID: 3206799
PMID: 22073178
DOI: 10.1371/journal.pone.0026633

[…] The DBS-Pred (http://gibk26.bio.kyutech.ac.jp/jouhou/shandar/netasa/dbs-pred/) was used to analyze DNA binding site of PAGE5, where the level of sensitivity was selected as Medium. The software IUPred (http://iupred.enzim.hu/) was used for prediction of disord […]

library_books

Identification of B Cell Epitopes of Alcohol Dehydrogenase Allergen of Curvularia lunata

2011
PLoS One
PMCID: 3102081
PMID: 21647452
DOI: 10.1371/journal.pone.0020020

[…] Solvent accessibility of all the residues in the generated model was calculated by ASAView (http://www.netasa.org/asaview/). Absolute surface area (ASA) of each residue was calculated by DSSP program. These values were transformed to relative values of ASA. Electrostatic potential for the protein was c […]

library_books

Integrated prediction of one dimensional structural features and their relationships with conformational flexibility in helical membrane proteins

2010
BMC Bioinformatics
PMCID: 3247134
PMID: 20977780
DOI: 10.1186/1471-2105-11-533

[…] Project name: HTM OneProject home page: http://tardis.nibio.go.jp/netasa/htmoneOperating system: Platform independentProgramming language: C, Perl and bash scriptingLicense: Free online usage with no restriction or warranty […]

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NETASA institution(s)
Institute of Multimedia and Software, Universiti Putra Malaysia, Serdang, Malaysia

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