NETASA specifications


Unique identifier OMICS_15443
Interface Web user interface
Restrictions to use None
Input data A sequence in a single letter code.
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Shandar Ahmad <>

Publication for NETASA

NETASA in publications

PMCID: 4850189
PMID: 27038471
DOI: 10.1007/s10142-016-0489-9

[…] as the default force with conjugate gradient and l-bfgs methods. differences between the two structures were evaluated by their rmsd values., solvent accessibility of the protein was checked by netasa (neural network-based prediction of solvent accessibility) view, providing the coordinate file of protein as the input (ahmad and gromiha ). for identification of the stabilizing residues […]

PMCID: 3798325
PMID: 24146818
DOI: 10.1371/journal.pone.0076066

[…] compared to absolute surface area (asa) of each residue calculated by dssp program ( these values were transformed to relative values of asa and visualized by asaview (, changes in the amino acid sequences of the epitopic immune-dominant regions to be recognized by igg and ige immunoglobulins (b-cell epitopes) were meticulously analyzed […]

PMCID: 3237601
PMID: 22194998
DOI: 10.1371/journal.pone.0029104

[…] of this observation., a two-stage prediction model that was trained on interacting residue pairs, as described above, has been developed and is publicly available at this online version of our model uses two fasta formatted sequences as inputs and performs pair-wise predictions between their residues. final scores are provided for residue pairs, […]

PMCID: 3206799
PMID: 22073178
DOI: 10.1371/journal.pone.0026633

[…] and running them on a 6% polyacrylamide gel in tbe buffer (ph 8.3). the dried gel was visualized using a fuji bas-1800 phosphorimager., the dbs-pred ( was used to analyze dna binding site of page5, where the level of sensitivity was selected as medium. the software iupred ( was used for prediction […]

PMCID: 3102081
PMID: 21647452
DOI: 10.1371/journal.pone.0020020

[…] epitopes –. promiscuous peptides binding to multiple hla class ii molecules were selected., solvent accessibility of all the residues in the generated model was calculated by asaview ( absolute surface area (asa) of each residue was calculated by dssp program. these values were transformed to relative values of asa. electrostatic potential for the protein […]

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NETASA institution(s)
Institute of Multimedia and Software, Universiti Putra Malaysia, Serdang, Malaysia

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