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NetBuilder specifications

Information


Unique identifier OMICS_21505
Name NetBuilder
Alternative name NetBuilder-apostrophe
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU Lesser General Public License version 2.1
Computer skills Medium
Version 0.5
Stability No
Maintained No

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NetBuilder in publications

 (6)
PMCID: 4681776
PMID: 26733860
DOI: 10.3389/fninf.2015.00029

[…] neuroscientists to build, simulate, and visualize large spiking neural networks in a holistic way supporting methods of visual programming. neuralsyns provides a graphical user interface called netbuilder to support network construction, which in turn generates output that can subsequently be processed by the simulation engine. a driving motivation is to build and parameterize complex […]

PMCID: 3925534
PMID: 24592186
DOI: 10.1155/2014/796279

[…] (more information about matlab at http://www.mathworks.com/products/matlab/), and exported to a net component using matlab builder ne (more information available at http://www.mathworks.com/products/netbuilder/)., on step 4, the original log file and the filtered log files are compared using two different metrics—mean squared error (mse), and maximum squared error (maxse). equation () […]

PMCID: 3477004
PMID: 23095805
DOI: 10.1186/1471-2164-13-S5-S2

[…] in the inference of bayesian networks. the inference is performed in three different types of data: (i) synthetic data obtained from a gaussian distribution, (ii) synthetic data simulated with netbuilder and (iii) real data obtained in flow cytometry experiments., bayesian networks with interventions and bayesian networks with inclusion of extra knowledge outperform simple bayesian […]

PMCID: 3171392
PMID: 18584050
DOI: 10.1155/2008/253894

[…] partitioning mi estimator is a valid alternative for the gaussian kernel estimator. specifically, we constructed 25 synthetic regulatory networks, each with 20 one-to-one gene regulations, using netbuilder []. to compare the network inference performance, we adopt the same metrics as used in []—recall and precision. recall, defined as , where is the number of true positive links […]

PMCID: 4449170
DOI: 10.1186/1471-2202-8-S2-P9

[…] or script language interpreter. spinet is composed of two components: a simulation engine, written in c programming language for performance purposes, and spinet network builder tool, or simply netbuilder, written in matlab® for expansibility purposes. the netbuilder tool provides a flexible and efficient graphical interface allowing the user to easily define and set all the main network […]


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NetBuilder funding source(s)
Supported by a grant from the Wellcome Trust and the allocation of QR funding by the School of Computer Science.

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