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NetCGlyc specifications

Information


Unique identifier OMICS_15179
Name NetCGlyc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Karin Julenius

Additional information


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Information


Unique identifier OMICS_15179
Name NetCGlyc
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input format FASTA
Output format GFF, short
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Karin Julenius

Additional information


A registration is needed to access to tools.

Publication for NetCGlyc

NetCGlyc citations

 (12)
library_books

Characterization of a New Protein Family Associated With the Silica Deposition Vesicle Membrane Enables Genetic Manipulation of Diatom Silica

2017
Sci Rep
PMCID: 5647440
PMID: 29044150
DOI: 10.1038/s41598-017-13613-8

[…] nline server. Signal peptide and transmembrane domains were predicted using SignalP and TMHMM respectively. The potential sites of post-translational modification were predicted using DictyOGlyc 1.1, NetCGlyc 1.0, NetNGlyc 1.0, YinOYang 1.2,, and NetPhos 2.0 from the EXPASY online server. […]

library_books

Retention of duplicated long wavelength opsins in mosquito lineages by positive selection and differential expression

2017
BMC Evol Biol
PMCID: 5359912
PMID: 28320313
DOI: 10.1186/s12862-017-0910-6

[…] nline bioinformatic tools as described below and by comparison to the squid and bovine rhodopsins []. Putative N-glycosylation sites were identified using NetNGlyc 1.0 (http://www.cbs.dtu.dk/services/NetCGlyc/) and palmitoylation sites were predicted with CSS-PALM 3.0 (http://csspalm.biocuckoo.org/). Putative phosphorylation sites were identified by comparison to the bovine rhodopsin sequence (mul […]

library_books

In Silico Analysis of Tumor Necrosis Factor α Induced Protein 8 Like 1 (TIPE1) Protein

2015
PLoS One
PMCID: 4514785
PMID: 26207809
DOI: 10.1371/journal.pone.0134114

[…] on Server. Firstly, N-terminal acetylation site was predicted using NetAcet Server and the results showed that no acetylation site existed in TIPE1. Secondly, C-mannosylation site was predicted using NetCGlyc Server and N-linked glycosylation site of TIPE1was predicted using NetNGlyc Server. However, neither C-mannosylation site nor N-linked glycosylation site could be found in the amino acid sequ […]

library_books

Dystonia type 6 gene product Thap1: identification of a 50 kDa DNA binding species in neuronal nuclear fractions

2014
PMCID: 4177242
PMID: 25231164
DOI: 10.1186/s40478-014-0139-1

[…] dentification of a specific E3 ligase will also be important. Other consensus sites for posttranslational modification include substrates for phosphorylation and glycosylation (Glycosylation servers: NetCGlyc http://www.cbs.dtu.dk/services/NetCGlyc; NetOGlyc http://www.cbs.dtu.dk/services/NetOGlyc; NetNGlyc http://www.cbs.dtu.dk/services/NetNGlyc. Phosphorylation servers: NetPhosK http://www.cbs.d […]

library_books

Molecular Evolution of Zika Virus during Its Emergence in the 20th Century

2014
PLoS Negl Trop Dis
PMCID: 3888466
PMID: 24421913
DOI: 10.1371/journal.pntd.0002636

[…] Potential glycosylation sites that may have adaptive value were previously described in ZIKV proteins , , . Thus, we investigated partial E sequences to detect potential glycosylation sites using NetCGlyc v1.0 , NetOGlyc v3.1 , YinOYang v1.2 and NetNGlyc v1.0 , methods that employ algorithms based in neural networks to predict, respectively, C-mannosylated, mucin-type O-linked, N-acetylgluco […]

library_books

Characterization of Multisugar Binding C Type Lectin (SpliLec) from a Bacterial Challenged Cotton Leafworm, Spodoptera littoralis

2012
PLoS One
PMCID: 3423437
PMID: 22916161
DOI: 10.1371/journal.pone.0042795

[…] ) was used to calculate physico-chemical parameters of the translated peptide (ProtParam tool). Furthermore, post-translational modifications and topology predictions were investigated using SignalP, NetCGlyc, NetOGlyc, NetGlycate, YinOYang, OGPET, NetPhos, NetPhosK, Sulfinator, NetNES, SOSUI and TMpred tools. Moreover, Phylogenetic analyses of the nucleotide sequence and its deduced amino acids w […]

Citations

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NetCGlyc institution(s)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden; Stockholm Bioinformatics Center, Albanova, Stockholm University, Stockholm, Sweden
NetCGlyc funding source(s)
This work was supported by the Knut and Alice Wallenberg foundation.

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