NetCGlyc specifications

Information


Unique identifier OMICS_15179
Name NetCGlyc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Karin Julenius <>

Additional information


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Information


Unique identifier OMICS_15179
Name NetCGlyc
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input format FASTA
Output format GFF, short
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Karin Julenius <>

Additional information


A registration is needed to access to tools.

Publication for NetCGlyc

NetCGlyc in pipeline

2017
PMCID: 5359912
PMID: 28320313
DOI: 10.1186/s12862-017-0910-6

[…] bioinformatic tools as described below and by comparison to the squid and bovine rhodopsins []. putative n-glycosylation sites were identified using netnglyc 1.0 (http://www.cbs.dtu.dk/services/netcglyc/) and palmitoylation sites were predicted with css-palm 3.0 (http://csspalm.biocuckoo.org/). putative phosphorylation sites were identified by comparison to the bovine rhodopsin sequence […]


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NetCGlyc in publications

 (14)
PMCID: 5647440
PMID: 29044150
DOI: 10.1038/s41598-017-13613-8

[…] server. signal peptide and transmembrane domains were predicted using signalp and tmhmm respectively. the potential sites of post-translational modification were predicted using dictyoglyc 1.1, netcglyc 1.0, netnglyc 1.0, yinoyang 1.2,, and netphos 2.0 from the expasy online server., rnaseq sequencing data was generated on a silicon-starvation synchronized culture of t. pseudonana. axenic […]

PMCID: 5359912
PMID: 28320313
DOI: 10.1186/s12862-017-0910-6

[…] bioinformatic tools as described below and by comparison to the squid and bovine rhodopsins []. putative n-glycosylation sites were identified using netnglyc 1.0 (http://www.cbs.dtu.dk/services/netcglyc/) and palmitoylation sites were predicted with css-palm 3.0 (http://csspalm.biocuckoo.org/). putative phosphorylation sites were identified by comparison to the bovine rhodopsin sequence […]

PMCID: 4904285
PMID: 27313903
DOI: 10.1155/2016/6762086

[…] predicted using netnglyc 1.0 server (http://www.cbs.dtu.dk/services/netnglyc/) for n-glycosylation, the netoglyc 4.0 server (http://www.cbs.dtu.dk/services/netoglyc/) for o-glycosylation [], and the netcglyc 1.0 sever (http://www.cbs.dtu.dk/services/netcglyc/) for c-glycosylation []. only a single asparagine residue in dtor was predicted to be n-glycosylated (supplementary figure 1 […]

PMCID: 4742707
PMID: 26838717
DOI: 10.1128/mBio.01938-15

[…] signalp 3.0 (http://www.cbs.dtu.dk/services/) and geneious v7.1.8. predictions of potential glycosylation sites and cysteine residues were investigated on complete viral polyprotein sequences using netcglyc v1.0, netoglyc v3.1, and netnglyc v1.0 (http://www.cbs.dtu.dk/services/) and geneious v7.1.8., phylogenetic trees were inferred using the maximum likelihood (ml) method implemented in phyml […]

PMCID: 4514785
PMID: 26207809
DOI: 10.1371/journal.pone.0134114

[…] server. firstly, n-terminal acetylation site was predicted using netacet server and the results showed that no acetylation site existed in tipe1. secondly, c-mannosylation site was predicted using netcglyc server and n-linked glycosylation site of tipe1was predicted using netnglyc server. however, neither c-mannosylation site nor n-linked glycosylation site could be found in the amino acid […]


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NetCGlyc institution(s)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden; Stockholm Bioinformatics Center, Albanova, Stockholm University, Stockholm, Sweden
NetCGlyc funding source(s)
This work was supported by the Knut and Alice Wallenberg foundation.

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