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Produces neural network predictions of C-mannosylation sites in mammalian proteins. NetCGlyc correctly predicts 93% of both positive and negative C-mannosylation sites. The method was used to scan the human genome and found 2573 exported or transmembrane transcripts with at least one predicted C-mannosylation site. The tool is available as a stand-alone software package, with the same functionality as the web application.

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NetCGlyc classification

NetCGlyc specifications

Software type:
Package
Restrictions to use:
None
Version:
1.0
Interface:
Web user interface
Computer skills:
Basic
Stability:
Stable

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0 user reviews

0 user reviews

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NetCGlyc forum

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NetCGlyc versioning

No versioning.

NetCGlyc classification

NetCGlyc specifications

Software type:
Standalone
Restrictions to use:
Academic users only
Output format:
GFF, short
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Input format:
FASTA
Operating system:
Unix/Linux
Version:
1.0

NetCGlyc support

Documentation

Additional information

Need registration to download the software

Credits

Publications

  • (Julenius, 2007) NetCGlyc 1.0: Prediction of mammalian C-mannosylation sites. Glycobiology.
    PMID: 17494086

Institution(s)

Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden; Stockholm Bioinformatics Center, Albanova, Stockholm University, Stockholm, Sweden

Funding source(s)

This work was supported by the Knut and Alice Wallenberg foundation.

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