netClass pipeline

netClass specifications

Information


Unique identifier OMICS_02241
Name netClass
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for netClass

netClass IN pipeline

2017
PMCID: 5737078
PMID: 28645144
DOI: 10.1093/nar/gkx554

[…] n50 value of less than 1 mb, we kept all nets that score >100 000 and kept all nested nets that align to the same locus (inversions or local translocations; net type ‘inv’ or ‘syn’ according to netclass) if they score >5000. for all other species, we kept all nets that score >10 000 and kept all nested nets of type ‘inv’ or ‘syn’ if they score >3000 (supplementary table s1). note […]

netClass institution(s)
Bonn-Aachen International Center for IT (B-IT), University of Bonn, Bonn, Germany

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