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NetCmpt specifications

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Unique identifier OMICS_12614
Name NetCmpt
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No

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Information


Unique identifier OMICS_12614
Name NetCmpt
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for NetCmpt

NetCmpt citation

library_books

Analysis of Microbial Functions in the Rhizosphere Using a Metabolic Network Based Framework for Metagenomics Interpretation

2017
PMCID: 5572346
PMID: 28878756
DOI: 10.3389/fmicb.2017.01606

[…] outlined in . similarly, a meta-network was constructed, containing all enzymatic functions annotated across the metagenomic data., using the netseed algorithm (), through its implantation in netcmpt (), an approximation of the relevant metabolic environment was retrieved for each of the five networks (meta-network and four environment-specific networks). based on network topology, […]


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NetCmpt institution(s)
Department of Biomedical Informatics, Columbia University, New York, NY, USA; Institute of Plant Science, Agricultural Research Organization, Bet Dagan, Israel; Department of Genome Sciences; Department of Computer Science and Engineering, University of Washington, Seattle, WA; Santa Fe Institute, Santa Fe, NM, USA

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