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NetCmpt

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A tool for calculating the competitive potential between pairs of bacterial species. The score describes the effective metabolic overlap (EMO) between two species, derived from analyzing the topology of the corresponding metabolic models. NetCmpt is based on the EMO algorithm, developed and validated in previous studies. It takes as input lists of species-specific enzymatic reactions (EC numbers) and generates a matrix of the potential competition scores between all pairwise combinations.

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NetCmpt versioning

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NetCmpt classification

NetCmpt specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes

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0 user reviews

No review has been posted.

NetCmpt forum

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No open topic.

NetCmpt classification

NetCmpt specifications

Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Stability:
Stable

NetCmpt support

Maintainer

  • At Kreimer <>
  • At Kreimer <>

Credits

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Publications

Institution(s)

Department of Biomedical Informatics, Columbia University, New York, NY, USA; Institute of Plant Science, Agricultural Research Organization, Bet Dagan, Israel; Department of Genome Sciences; Department of Computer Science and Engineering, University of Washington, Seattle, WA; Santa Fe Institute, Santa Fe, NM, USA

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