NetCooperate specifications

Information


Unique identifier OMICS_12613
Name NetCooperate
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The metabolic networks of two species, each encoded as a directed graph with nodes representing compounds and edges connecting substrates to products.
Output data The pairwise metrics as well a list of metabolic compounds complementary between the two species.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Elhan Borenstein

Information


Unique identifier OMICS_12613
Name NetCooperate
Interface Web user interface
Restrictions to use None
Input data The metabolic networks of two species, each encoded as a directed graph with nodes representing compounds and edges connecting substrates to products.
Programming languages Python
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Elhan Borenstein

Publication for NetCooperate

NetCooperate institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA; Department of Electrical Engineering & Computer Science, Center for Computational Biology, UC Berkeley, Berkeley, CA, USA; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA; Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel; Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA; Santa Fe Institute, Santa Fe, NM, USA
NetCooperate funding source(s)
This work was supported in part by New Innovator Award DP2 AT007802-01.

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