NetDS specifications


Unique identifier OMICS_12456
Name NetDS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 3.0.1
Stability Stable
Maintained Yes



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  • person_outline Kwon Y.K. <>

Publication for NetDS

NetDS in publications

PMCID: 5543083
PMID: 28775339
DOI: 10.1038/s41467-017-00268-2

[…] motifs associated with an invasive phenotype in bladder and 28 with breast cancer, respectively., to obtain the core regulatory network, we merged all the unique motifs using the cytoscape plugin netds (v3.0). we retrieved three disjoint sub-networks in both tumor entities, which we connected by reviving interactions among the nodes from the e2f1 regulatory network. thereby, we obtained […]

PMCID: 5318911
PMID: 28220871
DOI: 10.1038/srep42809

[…] the extended network., the final version of the network was further analyzed to identify regulatory motifs like feedback (fbls) and feedforward loops (ffls), with the help of the cytoscape plugin netds. the transcription factors and mirnas are responsible for the combinatorial regulation of gene expression at transcription level and post-transcription level, respectively. the network shown […]

PMCID: 3848080
PMID: 24350286
DOI: 10.1155/2013/703849

[…] of a gene regulatory network. the final version of the network can be further analyzed to identify regulatory motifs like feedforward loops (ffls), for example, with the help of the cytoscape plugin netds []. thereafter, the complete network or parts of it can be converted into a detailed mechanistic model which is described in detail in the following section. , (3)  model construction […]

PMCID: 3673126
PMID: 23591965
DOI: 10.3390/s130405054

[…] and negative performance characteristics that distinguish them from other irpd technologies. in comparison to mct devices, qwips are capable of lower dark currents, higher detectivities and higher netds. they make use of commonly used iii-v material processing techniques, making fabrication of the devices easier than with mcts. qwips also typically have greater radiation tolerances […]

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NetDS institution(s)
School of Electrical Engineering, University of Ulsan, Daehak-ro, Nam-gu, Ulsan, Japan
NetDS funding source(s)
This research was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2010-0010533).

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