NetGene2 specifications

Information


Unique identifier OMICS_09618
Name NetGene2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Single sequence
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Animals
    • Caenorhabditis elegans
    • Homo sapiens
  • Plants
    • Arabidopsis thaliana

Versioning


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Maintainer


  • person_outline Soren Bruk <>

Information


Unique identifier OMICS_09618
Name NetGene2
Interface Web user interface
Restrictions to use None
Input data Single sequence
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Animals
    • Caenorhabditis elegans
    • Homo sapiens
  • Plants
    • Arabidopsis thaliana

Maintainer


  • person_outline Soren Bruk <>

NetGene2 articles

NetGene2 citation

2013
PMCID: 3865592

[…] (splicefinder). splicefinder integrates two functional annotation tools for ngs, annovar and mutationtaster and two canonical splice site prediction programs for single mutation analysis, sspnn and netgene2. by splicefinder, we identified somatic mutations affecting rna splicing in a colon cancer sample, in eight atypical chronic myeloid leukemia (acml), and eight cml patients. a novel […]

NetGene2 institution(s)
Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark

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