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NetGlycate specifications

Information


Unique identifier OMICS_17912
Name NetGlycate
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Output format PDF
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Soren Brunak

Publication for NetGlycate

NetGlycate citations

 (13)
library_books

“In Silico” Characterization of 3 Phytase A and 3 Phytase B from Aspergillus niger

2017
PMCID: 5733987
PMID: 29348934
DOI: 10.1155/2017/9746191

[…] In the case of 3-phytase A, Netglycate 1.0 predicted the glycation potential of seven lysines, whereas the methodology proposed by Sáenz et al., 2016 suggests the glycation of 14 of them. For Lys94, there is no prediction of gly […]

library_books

Verification and characterization of an alternative low density lipoprotein receptor related protein 1 splice variant

2017
PLoS One
PMCID: 5491174
PMID: 28662213
DOI: 10.1371/journal.pone.0180354

[…] un using Clustal Omega (http://www.ebi.ac.uk/Tools/msa/clustalo/) and NCBI Protein BLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins). The prediction of glycosylation sites was done using NetGlycate 1.0 and NetNGlyc Server 1.0 [,]; disulphide bonding was predicted using Cystate and ProFunc [,]. Protein feature prediction was made by similarity and verified by Raptor X [], ProFunc serve […]

library_books

TSGΔ154 1054 splice variant increases TSG101 oncogenicity by inhibiting its E3 ligase mediated proteasomal degradation

2016
Oncotarget
PMCID: 4884989
PMID: 26811492
DOI: 10.18632/oncotarget.6973

[…] 54 protein with predicted molecular weight of 3 kDa had an apparent size of ~18 kDa in immunoblotting of NPC cells and tissues as shown in . The prediction of the post-translational modification with NetGlycate 1.0 shows possible glycation at its K9 and K10 residues. It is now recognized that a number of small protein molecules undergoing post-translational modification are protected from degradat […]

library_books

Structural determinants of adhesion by Protocadherin 19 and implications for its role in epilepsy

2016
eLife
PMCID: 5115871
PMID: 27787195
DOI: 10.7554/eLife.18529.033

[…] rotocadherins (), and mapped the glycosylation sites found in published clustered protocadherin structures from mammalian cells (). Potential Protocadherin-19 glycation sites were predicted using the NetGlycate 1.0 server for both the human and zebrafish sequences (). […]

library_books

TcCYPR04, a Cacao Papain Like Cysteine Protease Detected in Senescent and Necrotic Tissues Interacts with a Cystatin TcCYS4

2015
PLoS One
PMCID: 4671599
PMID: 26641247
DOI: 10.1371/journal.pone.0144440

[…] ar mass and pI of the proteins (http://www.expasy.org/cgi-bin/pi_tool), the putative phosphorylation sites (NetPhos 2.0, http://www.cbs.dtu.dk/services/NetPhos/) and the putative glycosylation sites (NetGlycate 1.0 Server and OGPET v1.0, http://www.geneinfinity.org/sp/sp_proteinptmodifs.html; YinOYang 1.2, http://www.cbs.dtu.dk/services/YinOYang/). Prediction of the secondary structures of protein […]

library_books

Plastid Proteomic Analysis in Tomato Fruit Development

2015
PLoS One
PMCID: 4570674
PMID: 26371478
DOI: 10.1371/journal.pone.0137266

[…] lational modification of proteins i.e. phosphorylation or glycosylation.It is known that glycosylated lipocalin is found in humours such as human tears or saliva []. A search was also performed using NetGlycate (http://www.cbs.dtu.dk/services/NetGlycate/) and Plotter (http://wlab.ethz.ch/protter/start/) to look into the possibility of TIL glycosylation in tomato, and TIL were found to have predict […]

Citations

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NetGlycate institution(s)
Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark, Lyngby, Denmark
NetGlycate funding source(s)
Supported by a grant from Danish Center for Scientific Computing and the EU FP6 BioSapiens Network of Excellence.

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