NetMatch statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Network querying chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

NetMatch specifications

Information


Unique identifier OMICS_19358
Name NetMatch
Alternative name NetMatchStar
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Rosalba Giugno <>

Publications for NetMatch

NetMatch in publications

 (4)
PMCID: 5686481
PMID: 29188012
DOI: 10.5256/f1000research.9906.r17046

[…] the networks under investigation, with some randomly generated networks., it is important to note that some apps that allow performing network comparison exist. for instance dynet , gasoline , netmatch* , and randomnetworks . randomnetworks has a lot of similarities with our app but is no longer maintained and it works only with cytoscape 2.x which makes it useless with the newly developed […]

PMCID: 5423010
PMID: 28482794
DOI: 10.1186/s12859-017-1672-2

[…] common protein that is a party of a ppi., to search for mirscoppi motifs, we firstly integrate brca-related mirna sponge interactions, ppis, and lncrna-target interactions into a network. we use the netmatchstar plugin [] in cytoscape [] to search the integrated network for the two types of mirscoppi motifs. finally, we merge the identified mirscoppi motifs to obtain the brca-related mirscoppi […]

PMCID: 4348553
PMID: 25741385
DOI: 10.1186/s13321-015-0055-9

[…] can be a useful strategy in prioritizing drug combinations to test experimentally. networks exported into cytoscape [], a open source software platform for network visualization, can use the netmatch plug-in [] to quickly search for motifs of interest., network modeling approaches are useful when network topology is known, but these approaches can be biased towards established pathways […]

PMCID: 3841158
PMID: 24303025
DOI: 10.1371/journal.pone.0080751

[…] in which a motif occurred more often than in the input network, divided by total number of random networks. was used as cutoff. respective sub-networks of enriched motifs were identified with netmatch cytoscape plugin. jactivemodules and clusterone were used for network module and protein complex detection. clusterone analysis was carried out with minimum cluster size of 3 with unweighted […]


To access a full list of publications, you will need to upgrade to our premium service.

NetMatch institution(s)
Department of Math and Computer Science, University of Catania, Catania, Italy; Department of Computer Science, University of Verona, Verona, Italy; The Donnelly Centre, University of Toronto, Toronto, ON, Canada; Department of Computer Science, Courant Institute of Mathematical Sciences, New York University, New York, NY, USA; Department of Clinical and Experimental Medicine, University of Catania, Catania, Italy

NetMatch reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review NetMatch