NetMHCcons pipeline

NetMHCcons specifications


Unique identifier OMICS_17787
Name NetMHCcons
Interface Web user interface
Restrictions to use None
Input data A list of peptides or a protein.
Input format FASTA
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes


  • person_outline Edita Karosiene <>

Publication for NetMHCcons

NetMHCcons citation

PMCID: 4551310

[…] in the 53 ebolavirus genomes that were non-redundant at the protein level. hla alleles were used as targets for the epitope predictions. hla class i-restricted 9-mer epitopes were predicted using netmhccons1.1 (karosiene et al. 2012) and netchop3.1 c-terminal peptide processing algorithm (nielsen et al. 2005). hla class ii-restricted 15-mer epitopes were predicted using netmhciipan3.0 […]

NetMHCcons institution(s)
Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
NetMHCcons funding source(s)
This work was supported by two NIH (National Institute of Health) grants (contract no. HHSN272200900045C, and contract no. HHSNN26600400006C).

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