NetMHCpan protocols

NetMHCpan specifications


Unique identifier OMICS_03503
Name NetMHCpan
Alternative names NetMHCpan-3.0, NetMHCpan 4.0
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 0.4
Stability Stable
Maintained Yes


  • person_outline Morten Nielsen <>

Publications for NetMHCpan

NetMHCpan IN pipelines

PMCID: 5450251
PMID: 28584450
DOI: 10.6026/97320630013094

[…] identified from hla matchmaker program available at, using the identified consensus aa sequences as the input, t-cell epitopes that bind to mhc class i were predicted using netmhcpan 3.1 online server. this program predicts binding of peptides to any mhc molecule of known sequence using artificial neural networks (anns) [19]. the epitopes of 9-mer and 10-mer lengths […]

PMCID: 5602290
PMID: 28943728
DOI: 10.6026/97320630013231

[…] to design a candidate t-cell epitope vaccine using immunoinformatics strategies. the peptide epitopes that bind to class i hla supertypes and stimulate t-cell immune responses are predicted by the netmhcpan software. we aimed to identify candidate tcell epitope(s) conserved in all 5 hantavirus genotypes (hantaan, dobrava-belgrade, seoul, gou and amur) causing hfrs. the epitopes that bind […]

PMCID: 5602290
PMID: 28943728
DOI: 10.6026/97320630013231

[…] was used for further analysis to identify t-cell epitopes., we selected the class i mhc supertype representative alleles (n=12) for the prediction of specific t-cell epitopes as available in the netmhcpan 3.1 online prediction server program [16]. the epitopes of 9-mer length (nonamer) was derived with the default threshold for strong binding and weak binding in terms of percent rank. strong […]

PMCID: 4852757
PMID: 27147821
DOI: 10.4137/BBI.S38378

[…] paproc-i tools (, while the transport antigen presentation (tap) binding was predicted by using tappred server (,46 propred and netmhcpan servers were used to identify the bond region on the class i hla of the antigen.47,48, the selected epitopes were further analyzed their conformation and stability by performing epitope […]

NetMHCpan institution(s)
Department of Bio and Health Informatics, Technical University of Denmark, Lyngby, Denmark; Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA; Instituto de Investigaciones Biotecnológicas, Universidad Nacional de San Martín, San Martín, Argentina

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