NetMHCstab pipeline

NetMHCstab specifications

Information


Unique identifier OMICS_21804
Name NetMHCstab
Interface Web user interface
Restrictions to use None
Input data A single sequence or several sequences.
Input format FASTA,PEPTIDE
Output data Height columns: Residue number, HLA Allele, Peptide sequence, Protein identifier, Prediction score, Affinity as IC50 value in nM, %Random - %Rank of prediction score to a set of 1000.000 random natural 9mer peptides and Binding level.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline NetChop Team <>
  • person_outline Morten Nielsen <>

Additional information


http://www.cbs.dtu.dk/services/NetMHCstab/instructions.html

Publication for NetMHCstab

NetMHCstab IN pipeline

2016
PMCID: 5019413
PMID: 27618304
DOI: 10.1371/journal.pone.0162808

[…] as available at http://www.cbs.dtu.dk/biotools/mhcmotifviewer/human_alleles.html [24]., we also compared miha and their allelic variants in predicted stability of the peptide-hla class i complex by netmhcstab 1.0 (s3a fig). hla class i restriction alleles were available for 41 pairs of miha and allelic variants. for 7 pairs with polymorphic amino acids at anchor residues, predicted stability […]

NetMHCstab institution(s)
Department of Systems Biology, Centre for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark; Laboratory of Experimental Immunology, University of Copenhagen, Copenhagen, Denmark; Instituto de Investigaciones Biotecnologicas, Universidad Nacional de San Martin, San Martin, Buenos Aires, Argentina
NetMHCstab funding source(s)
Supported in whole or in part with funds from the National Institutes of Health, under Contracts No. HHSN272200900045C and HHSN272201200010C.

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