NetNES pipeline

NetNES specifications

Information


Unique identifier OMICS_17911
Name NetNES
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Soren Brunak <>

Publication for NetNES

NetNES IN pipelines

 (6)
2017
PMCID: 5387057
PMID: 28443083
DOI: 10.3389/fmicb.2017.00612

[…] fisher scientific)., deduced amino acid sequences of cacv proteins were analyzed for potential nuclear localization (import) and nuclear export signals using cnls mapper (kosugi et al., 2009) and netnes 1.1 server (la cour et al., 2004). secondary structure prediction and alignment of cacv (km589494), tswv nsm (qld-1255, unpublished), tmv p30 (nc_001367.1), and tvcv p30 (u03387) were carried […]

2012
PMCID: 3371031
PMID: 22715410
DOI: 10.1371/journal.pone.0038740

[…] bear other localization motifs we searched their amino acid sequences using the eukaryotic linear motif resource (elm) (http://elm.eu.org) [22], psortii (http://psort.ims.u-tokyo.ac.jp/) [23] and netnes1.1 (http://www.cbs.dtu.dk/services/netnes/) [24] servers, with additional manual verification. we found that the sa1 and sa2s proteins contain six putative nuclear localization signals (nls) […]

2012
PMCID: 3371031
PMID: 22715410
DOI: 10.1371/journal.pone.0038740

[…] their amino acid sequences using the eukaryotic linear motif resource (elm) (http://elm.eu.org) [22], psortii (http://psort.ims.u-tokyo.ac.jp/) [23] and netnes1.1 (http://www.cbs.dtu.dk/services/netnes/) [24] servers, with additional manual verification. we found that the sa1 and sa2s proteins contain six putative nuclear localization signals (nls) each and sa2l – seven. one signal is common […]

2012
PMCID: 3527548
PMID: 23285058
DOI: 10.1371/journal.pone.0052476

[…] predictions of nucleolar localization sequences in eukaryotic proteins (http://www.compbio.dundee.ac.uk/nod). nuclear localization signals were predicted using psort ii (http://www.psort.org/). netnes 1.1 predicts leucine-rich nuclear export signals (nes) in eukaryotic proteins (http://www.cbs.dtu.dk/services/netnes/). multiple sequence alignments were made with clustalw […]

2012
PMCID: 3527548
PMID: 23285058
DOI: 10.1371/journal.pone.0052476

[…] localization signals were predicted using psort ii (http://www.psort.org/). netnes 1.1 predicts leucine-rich nuclear export signals (nes) in eukaryotic proteins (http://www.cbs.dtu.dk/services/netnes/). multiple sequence alignments were made with clustalw (http://www.ebi.ac.uk/tools/msa/clustalw2/)., the localization of endogenous and ectopic rps9 was analyzed in the u2os osteosarcoma cell […]

NetNES institution(s)
Center for Biological Sequence Analysis, Biocentrum-DTU, Technical University of Denmark, Lyngby; Department of Protein Chemistry, Institute of Molecular Biology, University of Copenhagen, Copenhagen, Denmark

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