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Citations per year

Number of citations per year for the bioinformatics software tool NetNES
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Tool usage distribution map

This map represents all the scientific publications referring to NetNES per scientific context
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Popular tool citations

chevron_left Leucine-rich nuclear export signal prediction chevron_right
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Protocols

NetNES specifications

Information


Unique identifier OMICS_17911
Name NetNES
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Soren Brunak

Publication for NetNES

NetNES citations

 (138)
library_books

Characterization of the DNA binding activity of structural protein VP1 from chicken anaemia virus

2018
PMCID: 5936033
PMID: 29728113
DOI: 10.1186/s12917-018-1465-5

[…] the nucleus during its early life cycle. In fact, we have not only predicted the presence of nuclear localization signals (NLSs) with PSORT II but also predicted nuclear exporting signals (NESs) with NetNES server (http://www.cbs.dtu.dk/services/NetNES/). These putative NLS motifs were within the amino acid sequence of VP1, which spanned from amino acid residues 3 to 19 (NLS1) and 24 to 47 (NLS2). […]

library_books

Nuclear egress of TDP 43 and FUS occurs independently of Exportin 1/CRM1

2018
Sci Rep
PMCID: 5935713
PMID: 29728564
DOI: 10.1038/s41598-018-25007-5

[…] Using bioinformatic NES prediction tools (NES finder 0.2 and NetNES 1.1 Server), we identified two putative CRM1-dependent NESs in each TDP-43 (at positions 222 and 239) and FUS (at positions 289 and 301) (Fig. ). NES-239 (IAQSLCGEDLII) in TDP-43 and NES-289 (V […]

library_books

Subcellular Localization Screening of Colletotrichum higginsianum Effector Candidates Identifies Fungal Proteins Targeted to Plant Peroxisomes, Golgi Bodies, and Microtubules

2018
Front Plant Sci
PMCID: 5942036
PMID: 29770142
DOI: 10.3389/fpls.2018.00562

[…] or less than, the mean ChEC MW (11.45 kDa, Supplementary Table ). In the case of ChEC30 and ChEC103, this localization was consistent with the detection of a putative nuclear export signal using the NetNES prediction tool ().The subcellular localizations determined experimentally by GFP-tagging the ChECs were compared with localizations predicted by the LOCALIZER tool () running in ‘effector mode […]

library_books

Identification and Characterization of Wheat Yellow Striate Virus, a Novel Leafhopper Transmitted Nucleorhabdovirus Infecting Wheat

2018
Front Microbiol
PMCID: 5861215
PMID: 29593700
DOI: 10.3389/fmicb.2018.00468

[…] d SignalP were used to predict signal peptide cleavage sites (http://www.cbs.dtu.dk/services/SignalP/). The nuclear localization and export signals were predicted by cNLS Mapper (Kosugi et al., ) and NetNES 1.1 (La Cour et al., ), respectively. Mapping of clean RNA-seq reads from both wheat and leafhopper to the complete viral genome sequence as a reference was performed using the CLC Genomics Wor […]

call_split

The membrane tethered transcription factor EcbZIP17 from finger millet promotes plant growth and enhances tolerance to abiotic stresses

2018
Sci Rep
PMCID: 5794737
PMID: 29391403
DOI: 10.1038/s41598-018-19766-4
call_split See protocol

[…] ne domains in EcbZIP17 were observed using the Simple Modular Architecture Research Tool (SMART; http://smart.embl-heidelberg.de/). The leucine rich nuclear export signals (NES) were predicted by the NetNES 1.1 server (http://www.cbs.dtu.dk/services/NetNES/), whereas the nuclear localisation signal was predicted by the cNLS Mapper tool (http://nls-mapper.iab.keio.ac.jp/cgi-bin/NLS_Mapper_form.cgi) […]

library_books

Functional characterization of the circadian clock in the Antarctic krill, Euphausia superba

2017
Sci Rep
PMCID: 5735174
PMID: 29255161
DOI: 10.1038/s41598-017-18009-2

[…] MBL SMART version 7 (http://smart.embl.de) to detect PFAM domains and motifs of clock proteins; NLS Mapper (http://nls-mapper.iab.keio.ac.jp) for nuclear localisation signal prediction (cut-off = 5); NetNES version 1.1 (http://www.cbs.dtu.dk/services/NetNES) as well as consensus sequences for identifying nuclear export signals; and NetPhos 3.1 Server (http://www.cbs.dtu.dk/services/NetPhos/) to pr […]


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NetNES institution(s)
Center for Biological Sequence Analysis, Biocentrum-DTU, Technical University of Denmark, Lyngby; Department of Protein Chemistry, Institute of Molecular Biology, University of Copenhagen, Copenhagen, Denmark

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